CN188705

Overview
NameCN188705
Unique NameCN188705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  279 PIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            P   + FP  L +  R  + P++D+ + TADP +EPP+ VV+T LS++A +YP  KL+ YVSDDG S LT F+  EA+KFA  W+PFC+K+N   R P  YF
Sbjct:   75 PADTKPFPDRLDE--RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYF 174          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 59/179 (32.96%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   63 PLNTTEPIRRTALNRV-FAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            PL+   P+  + +N     +V    + ++  H+  T  +R   P                AL W   Q  +  PI+R  +   L     +   P +  A+D+ + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E ++FA  W+PF +K+N+  R P  YF
Sbjct:  260 PLSRKVPLPSSRINPYRMVIVLRLVVLSIFLHYRITNPVRNAYPLWLLSVICEIW----FALSWILDQFPKWFPINRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFVKKYNIEPRAPEWYF 434          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 63/181 (34.81%), Postives = 90/181 (49.72%), Query Frame = 3
Query:   63 PLNTTEPIRRTALNRV-FAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXXIL--ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            PL+   PIR + +N     ++   AI  L +H+      R  +P               +  A+ W   Q  +  PI R  +   L    +K  +P     +DV + T DP KEPPL   NT LS++A DYP +K++ YVSDDG + LT  A  + A+FA  W+PFC+KFN+  R P  YF
Sbjct:  261 PLSRKLPIRSSRINPYRMLILCRLAILGLFFHY------RILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSGLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSDTAEFARKWVPFCKKFNIEPRAPEWYF 435          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A  W   Q  +  PI+R  F   L     +   P +   +DV + T DP KEPPL   NT LS++A DYP +K++ YVSDDG + LT  A  E A+F+  W+PFC+KFN+  R P  YF
Sbjct:  302 AFSWLLDQFPKWYPINRETFLDRLALRYDRDGEPSQLAPVDVFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVACYVSDDGSAMLTFEALSETAEFSKKWVPFCKKFNIEPRAPEFYF 420          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI R  +   L    ++   P     +DV + T DP KEPPL   NT LS++A DYP EK+S YVSDDG S LT  +  E A+FA  W+PFC+KF++  R P  YF
Sbjct:  278 AVSWILDQFPKWFPIERETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPLKEPPLVTSNTVLSILAMDYPVEKISCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEMYF 396          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 56/124 (45.16%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNLQ-KVVRPR--------EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            AL W   Q  ++ PI+R      L+ K   P         + P +D+ + TADP KEP L   NT LS++A DYP +KL+ YVSDDGG+ LT  A  EAA FA  W+PFCRK  +  RNP +YF
Sbjct:  307 ALSWVLDQLPKLCPINRATDLSVLKDKFETPTPSNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYF 430          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 56/124 (45.16%), Postives = 72/124 (58.06%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNLQ-KVVRPR--------EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            AL W   Q  ++ PI+R      L+ K   P         + P +D+ + TADP KEP L   NT LS++A DYP +KL+ YVSDDGG+ LT  A  EAA FA  W+PFCRK  +  RNP +YF
Sbjct:  307 ALSWVLDQLPKLCPINRATDLSVLKDKFETPTPSNPTGKSDLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYF 430          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.447e-22
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNLQ----KVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI R  +   L     K  +P +   +D  + T DP KEPPL   NT LS+++ DYP EK+S YVSDDG + LT  A  E ++FA  W+PFC+KFN+  R P  YF
Sbjct:  319 AMSWILDQFPKWLPIERETYLDRLSLRFDKEGQPSQLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYF 437          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI R  +   L    ++   P    A+D+ + T DP KEPPL   NT LS++A DYP +K+S YVSDDG S LT  +  E A+FA  W+PFC+KF++  R P  YF
Sbjct:  307 AVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYF 425          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.441e-21
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI R  +   L    ++   P    A+D+ + T DP KEPPL   NT LS++A DYP +K+S YVSDDG S LT  +  E A+FA  W+PFC+KF++  R P  YF
Sbjct:  307 AVSWILDQFPKWYPIDRETYLDRLSLRYEREGEPSLLSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYF 425          
The following BLAST results are available for this feature:
BLAST of CN188705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLB1_ARATH4.952e-2248.04Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CESA8_ORYSJ4.952e-2232.96Probable cellulose synthase A catalytic subunit 8 ... [more]
CESA2_ARATH4.952e-2234.81Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESAA_ARATH6.468e-2242.86Probable cellulose synthase A catalytic subunit 10... [more]
CESA7_ARATH6.468e-2243.70Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CSLD1_ORYSJ8.447e-2245.16Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI8.447e-2245.16Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CESA6_ORYSJ8.447e-2242.86Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA9_ORYSJ1.441e-2142.86Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI1.441e-2142.86Cellulose synthase A catalytic subunit 9 [UDP-form... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188705 ID=CN188705; Name=CN188705; organism=Citrus sinensis; type=EST; length=719bp
GCGTTTGATATAAGCACATCAAAAAAGAAATGAGAGGCAAAAGTAGCGGC
ACCGAGATCCCTCCTCTTAACACGACGGAGCCCATCCGCCGGACCGCCTT
GAACCGTGTGTTCGCGGTAGTTTACACGTGTGCCATATTTGCTCTACTGT
ATCACCATGTAGAAACACTAACTATCCGCGGCAGAAACCCCTTGGTGCTA
GTAGTATCTTTCTGTTTGTTACTGTCCGATGTTATTCTAGCCTTGATGTG
GGCAACCACGCAGGCCTTTCGCATGCGCCCTATTCATCGCAGGGAATTCC
CCGGAAACCTCCAAAAAGTTGTGAGACCGAGAGAATTTCCTGCTTTGGAT
GTGCTTATATGCACAGCGGATCCCTACAAGGAACCGCCCCTCAGTGTTGT
GAACACGGCTTTATCGGTGATGGCTTACGACTATCCAACGGAGAAGCTTT
CGGTTTATGTATCGGACGATGGTGGATCGGCACTTACTCTCTTCGCTTTC
ATGGAGGCAGCTAAGTTTGCAGCCCACTGGTTACCTTTTTGCAGGAAGTT
CAATCTTATGGAGAGAAACCCTCATGCATATTTCTCCTCATCATCATCCA
CATCAACCCACGCTTGTTGCTCCGAGATTAAGGTATACATATAAATAGAA
TATAATGGTAGCATCTCATTTTTACAAAGTGATGATGATATTTCAATATA
TTAATAAATTTAAAAAAAA
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