CN188705

Overview
NameCN188705
Unique NameCN188705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.192e-21
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A  W   Q  +  PI+R  +   L     +   P +   +DV + T DP KEPPL   NT LS+++ DYP +K++ YVSDDG + LT  +  E A+FA  W+PFC+KFN+  R P  YF
Sbjct:  315 AFSWLLDQFPKWYPINRETYLDRLAIRYDRDGEPSQLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYF 433          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 56/146 (38.36%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  174 IRGRNPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHR--------REFPGNLQKVVRPR-EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            IR  NP                A  W      ++ P+HR          F     +  + R + P +DV + +ADP KEPPL   NT LS++A DYP EKL+ Y+SDDGG+ L+  A  E A FA  W+PFCRK  +  R P AYF
Sbjct:  345 IRHPNPEAVWLWAMSVACEVWFAFSWLLDSLPKLCPVHRAADLAVLAERFESPTARNPKGRSDLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYF 490          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI R  +   L    +K  +P     +DV + T DP KEPPL   NT LS++A DYP +K++ YVSDDG + LT  A  E A+FA  W+PFC+K+ +  R P  YF
Sbjct:  316 AVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYF 434          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            AL W   Q  +  P++R  +   L     +   P +  A+D+ + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + L+  +  E ++FA  W+PFC+K+++  R P  YF
Sbjct:  299 ALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYF 417          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI+R  +   L    ++     +  A+D  + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + L+  + +E A FA  W+PFC+K+++  R P  YF
Sbjct:  224 AVSWVLDQFPKWSPINRETYIDRLSARFEREGEQSQLAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKYSIEPRAPEFYF 342          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  333 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPT--EKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            E PA+D+L+ TADP  EPPL  VNT LS++A DYP   E+L+ YVSDDG S LT  A  EAA FAA W+PFCR++ +  R P  YF
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYF 218          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.549e-20
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 3
Query:  333 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPT--EKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            E PA+D+L+ TADP  EPPL  VNT LS++A DYP   E+L+ YVSDDG S LT  A  EAA FAA W+PFCR++ +  R P  YF
Sbjct:  133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYF 218          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI R  +   L     K  +  +   +D  + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E ++FA  W+PFC+K+++  R P  YF
Sbjct:  319 AMSWILDQFPKWFPIERETYLDRLTLRFDKEGQTSQLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYF 437          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 47/119 (39.50%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            AL W   Q  +  P+ R  +   L    ++   P     +D  + T DP KEPP+   NT LS++A DYP +++S YVSDDG S L      E A+FA  W+PFC+KF +  R P  YF
Sbjct:  253 ALSWILDQLPKWSPVTRETYLDRLALRYERDGEPCRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVDRVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKFTIEPRAPEFYF 371          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.906e-20
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A+ W   Q  +  PI R  +   L     K  +  +   +D  + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E ++FA  W+PFC++++L  R P  YF
Sbjct:  318 AMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436          
The following BLAST results are available for this feature:
BLAST of CN188705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CESA1_ARATH4.192e-2141.18Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CSLD4_ORYSJ5.475e-2138.36Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CESA6_ARATH5.475e-2142.02Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA3_ARATH7.151e-2139.50Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA8_ARATH2.717e-2039.50Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CSLH2_ORYSJ3.549e-2056.98Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI3.549e-2056.98Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CESA3_ORYSJ4.635e-2040.34Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA7_ORYSJ7.906e-2039.50Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA5_ORYSJ7.906e-2040.34Probable cellulose synthase A catalytic subunit 5 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188705 ID=CN188705; Name=CN188705; organism=Citrus sinensis; type=EST; length=719bp
GCGTTTGATATAAGCACATCAAAAAAGAAATGAGAGGCAAAAGTAGCGGC
ACCGAGATCCCTCCTCTTAACACGACGGAGCCCATCCGCCGGACCGCCTT
GAACCGTGTGTTCGCGGTAGTTTACACGTGTGCCATATTTGCTCTACTGT
ATCACCATGTAGAAACACTAACTATCCGCGGCAGAAACCCCTTGGTGCTA
GTAGTATCTTTCTGTTTGTTACTGTCCGATGTTATTCTAGCCTTGATGTG
GGCAACCACGCAGGCCTTTCGCATGCGCCCTATTCATCGCAGGGAATTCC
CCGGAAACCTCCAAAAAGTTGTGAGACCGAGAGAATTTCCTGCTTTGGAT
GTGCTTATATGCACAGCGGATCCCTACAAGGAACCGCCCCTCAGTGTTGT
GAACACGGCTTTATCGGTGATGGCTTACGACTATCCAACGGAGAAGCTTT
CGGTTTATGTATCGGACGATGGTGGATCGGCACTTACTCTCTTCGCTTTC
ATGGAGGCAGCTAAGTTTGCAGCCCACTGGTTACCTTTTTGCAGGAAGTT
CAATCTTATGGAGAGAAACCCTCATGCATATTTCTCCTCATCATCATCCA
CATCAACCCACGCTTGTTGCTCCGAGATTAAGGTATACATATAAATAGAA
TATAATGGTAGCATCTCATTTTTACAAAGTGATGATGATATTTCAATATA
TTAATAAATTTAAAAAAAA
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