CN188705

Overview
NameCN188705
Unique NameCN188705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  333 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            E P +DV + T DP  EP L  VN+ LS++A DYP ++ + Y+SDDGG+ +   A +E AKFA  W+PFCRK  +  R P +YF
Sbjct:  174 ELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYF 257          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  339 PALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            P +DV + TADP  EP L  +N  LS++A DYP ++ + Y+SDD G+ +   A +E AKFA  W+PFCRK  +  R+P +YF
Sbjct:  168 PGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  339 PALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            P +DV + TADP  EP L  +N  LS++A DYP ++ + Y+SDD G+ +   A +E AKFA  W+PFCRK  +  R+P +YF
Sbjct:  168 PGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = 3
Query:  237 LALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            LA  W   Q  ++ P +R  +   L    +K         +DV +  AD  +EPPL+  NT LSV+A DYP   ++ YV DDG   L   +  EAA FA  W+PFCR+  +  R P  YF
Sbjct:   87 LAASWLIAQLPKLSPANRVTYLDRLASRYEKGGEASRLAGVDVFVAAADAAREPPLATANTVLSVLAADYPAGGVACYVHDDGADMLVFESLFEAAGFARRWIPFCRRHGVEPRAPELYF 206          
The following BLAST results are available for this feature:
BLAST of CN188705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLF4_ORYSJ3.673e-1747.62Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF3_ORYSJ8.182e-1746.34Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI8.182e-1746.34Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CESAB_ORYSJ1.396e-1637.50Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188705 ID=CN188705; Name=CN188705; organism=Citrus sinensis; type=EST; length=719bp
GCGTTTGATATAAGCACATCAAAAAAGAAATGAGAGGCAAAAGTAGCGGC
ACCGAGATCCCTCCTCTTAACACGACGGAGCCCATCCGCCGGACCGCCTT
GAACCGTGTGTTCGCGGTAGTTTACACGTGTGCCATATTTGCTCTACTGT
ATCACCATGTAGAAACACTAACTATCCGCGGCAGAAACCCCTTGGTGCTA
GTAGTATCTTTCTGTTTGTTACTGTCCGATGTTATTCTAGCCTTGATGTG
GGCAACCACGCAGGCCTTTCGCATGCGCCCTATTCATCGCAGGGAATTCC
CCGGAAACCTCCAAAAAGTTGTGAGACCGAGAGAATTTCCTGCTTTGGAT
GTGCTTATATGCACAGCGGATCCCTACAAGGAACCGCCCCTCAGTGTTGT
GAACACGGCTTTATCGGTGATGGCTTACGACTATCCAACGGAGAAGCTTT
CGGTTTATGTATCGGACGATGGTGGATCGGCACTTACTCTCTTCGCTTTC
ATGGAGGCAGCTAAGTTTGCAGCCCACTGGTTACCTTTTTGCAGGAAGTT
CAATCTTATGGAGAGAAACCCTCATGCATATTTCTCCTCATCATCATCCA
CATCAACCCACGCTTGTTGCTCCGAGATTAAGGTATACATATAAATAGAA
TATAATGGTAGCATCTCATTTTTACAAAGTGATGATGATATTTCAATATA
TTAATAAATTTAAAAAAAA
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