CN188704

Overview
NameCN188704
Unique NameCN188704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = -2
Query:  143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394
            + P LD+ + TADP KEPPL   NT LS++A DYP EKLS YVSDDGG+ LT  A  EAA FA  W+PFCRK ++  RNP +YF
Sbjct:  396 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYF 479          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = -2
Query:  143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394
            + P LD+ + TADP KEPPL   NT LS++A DYP EKLS YVSDDGG+ LT  A  EAA FA  W+PFCRK ++  RNP +YF
Sbjct:  396 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYF 479          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = -2
Query:  143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394
            + P +DV + TADP KEPPL   NT LS++A DYP EKLS Y+SDDGG+ LT  A  EA +FA +W+PFCRK ++  RNP +YF
Sbjct:  263 DLPGVDVFVSTADPEKEPPLVTANTLLSILAVDYPIEKLSAYISDDGGAILTFEAMAEAVRFAEYWVPFCRKHDIEPRNPDSYF 346          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = -2
Query:  143 MWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 481
            +W      +  P   + +P  L +  R  E P +D+ + TADP +EPPL VVNT LS++A +YP  KL+ YVSDDG S LT F+  EA+KFA  W+PFC+K+N+  R P  YF
Sbjct:   64 VWLLITNIKWSPADYKTYPERLDE--RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF 174          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.668e-23
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            + MW      +  P   + +P  L +  R  + P++D+ + TADP +EPP+ VVNT LS++A +YP  KL+ YVSDDG S LT F+  EA+KF   W PFC+K+N+  R P  YF
Sbjct:   62 SFMWLIITCIKWSPAEDKPYPNRLDE--RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF 174          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            + +W    + +  P   + +P  L +  R  + P++D+ + TADP +EPP+ V NT LS++A +YP  KL+ YVSDDG S LT F+  EA+KFA  W+PFC+K+N+  R P  YF
Sbjct:   62 SFIWLLITSIKWSPASYKSYPERLDE--RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYF 174          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRR----------EFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            A  W   Q  ++ PI+R           E P       R  + P LDV I TADPYKEP L   NT LS++A +YP EKL VY+SDDGG+ LT  +  EA  FA  W+PFCRK ++  RNP +YF
Sbjct:  195 AFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRS-DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRR----------EFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            A  W   Q  ++ PI+R           E P       R  + P LDV I TADPYKEP L   NT LS++A +YP EKL VY+SDDGG+ LT  +  EA  FA  W+PFCRK ++  RNP +YF
Sbjct:  195 AFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRS-DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 61/149 (40.94%), Postives = 79/149 (53.02%), Query Frame = -2
Query:  143 TLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRR-EFPGNLQKVVRPR--------EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 562
            T  ++ +NP             +  AL W   Q  ++ PI+R  +     +K   P         + P  DV + TADP KEPPL   NT LS++A +YP EKLS YVSDDGG+ LT  A  EAA FA  W+PFCRK  +  RNP +YF
Sbjct:  312 TWRVKHQNPDAVWLWGMSVVCELWFALSWLLDQLPKLCPINRATDLQVLKEKFETPTASNPTGKSDLPGFDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHAIEPRNPDSYF 460          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22
Identity = 68/170 (40.00%), Postives = 86/170 (50.59%), Query Frame = -2
Query:  143 PIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPT--EKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 646
            PIRRTA  R+  +     + ALL H V        +                   MW      +  P+    FP NL +  R  E PA+D+ + TADP  EPPL  VNT LS++A DYP   EKL+ YVSDDG S LT +A  EAA+FA  W+PFCR+  +  R P  YF
Sbjct:   16 PIRRTAW-RLADLAILFLLLALLLHRV-------LHDSGAPWRRAALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAE--RIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYF 175          
The following BLAST results are available for this feature:
BLAST of CN188704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLD2_ORYSJ1.198e-2359.52Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI1.198e-2359.52Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD1_ARATH1.198e-2357.14Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLB4_ARATH2.043e-2346.02Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB6_ARATH2.668e-2343.48Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB3_ARATH3.484e-2342.61Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLD5_ORYSJ7.762e-2345.60Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI7.762e-2345.60Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLD2_ARATH7.762e-2340.94Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLH1_ORYSJ1.014e-2240.00Cellulose synthase-like protein H1 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188704 ID=CN188704; Name=CN188704; organism=Citrus sinensis; type=EST; length=725bp
CCCCCTGAGTTTTTTTTTTATTTATTATATATTGAAATATCATCATCACT
TTGCTATTTGAGATGCTACCATTATATTCTATTTATATGTATACCTTAAT
CTCGGAGCAACAAGCGTGGGTTGATGTGGATGATGATGAGGAGAAATATG
CATGAGGGTTTCTCTCCATAAGATTGAACTTCCTGCAAAAAGGTAACCAG
TGGGCTGCAAACTTAGCTGCCTCCATGAAAGCGAAGAGAGTAAGTGCCGA
TCCACCATCGTCCGATACATAAACCGAAAGCTTCTCCGTTGGATAGTCGT
AAGCCATCACCGATAAAGCCGTGTTCACAACACTGAGGGGCGGTTCCTTG
TAGGGATCCGCTGTGCATATAAGCACATCCAAAGCAGGAAATTCTCTCGG
TCTCACAACTTTTTGGAGGTTTCCGGGGAATTCCCTGCGATGAATAGGGC
GCATGCGAAAGGCCTGCGTGGTTGCCCACATCAAGGCTAGAATAACATCG
GACAGTAACAAACAGAAAGATACTACTAGCACCAAGGGGTTTCTGCCGCG
GATAGTTAGTGTTTCTACATGGTGATACAGTAGAGCAAATATGGCACACG
TGTAAACTACCGCGAACACACGGTTCAAGGCGGTCCGGCGGATGGGCTCC
GTCGTGTTAAGAGGAGGGATCTCGGTGCCGCTACTTTTGCCTCTCATTTC
TTTTTTGATGTGCTTATATCAGCCT
back to top