CN188704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23 Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = -2 Query: 143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394 + P LD+ + TADP KEPPL NT LS++A DYP EKLS YVSDDGG+ LT A EAA FA W+PFCRK ++ RNP +YF Sbjct: 396 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYF 479
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23 Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = -2 Query: 143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394 + P LD+ + TADP KEPPL NT LS++A DYP EKLS YVSDDGG+ LT A EAA FA W+PFCRK ++ RNP +YF Sbjct: 396 DLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYF 479
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23 Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = -2 Query: 143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394 + P +DV + TADP KEPPL NT LS++A DYP EKLS Y+SDDGG+ LT A EA +FA +W+PFCRK ++ RNP +YF Sbjct: 263 DLPGVDVFVSTADPEKEPPLVTANTLLSILAVDYPIEKLSAYISDDGGAILTFEAMAEAVRFAEYWVPFCRKHDIEPRNPDSYF 346
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23 Identity = 52/113 (46.02%), Postives = 71/113 (62.83%), Query Frame = -2 Query: 143 MWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 481 +W + P + +P L + R E P +D+ + TADP +EPPL VVNT LS++A +YP KL+ YVSDDG S LT F+ EA+KFA W+PFC+K+N+ R P YF Sbjct: 64 VWLLITNIKWSPADYKTYPERLDE--RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF 174
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.668e-23 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 + MW + P + +P L + R + P++D+ + TADP +EPP+ VVNT LS++A +YP KL+ YVSDDG S LT F+ EA+KF W PFC+K+N+ R P YF Sbjct: 62 SFMWLIITCIKWSPAEDKPYPNRLDE--RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF 174
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23 Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 + +W + + P + +P L + R + P++D+ + TADP +EPP+ V NT LS++A +YP KL+ YVSDDG S LT F+ EA+KFA W+PFC+K+N+ R P YF Sbjct: 62 SFIWLLITSIKWSPASYKSYPERLDE--RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYF 174
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23 Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRR----------EFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 A W Q ++ PI+R E P R + P LDV I TADPYKEP L NT LS++A +YP EKL VY+SDDGG+ LT + EA FA W+PFCRK ++ RNP +YF Sbjct: 195 AFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRS-DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23 Identity = 57/125 (45.60%), Postives = 71/125 (56.80%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRR----------EFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 A W Q ++ PI+R E P R + P LDV I TADPYKEP L NT LS++A +YP EKL VY+SDDGG+ LT + EA FA W+PFCRK ++ RNP +YF Sbjct: 195 AFSWLLDQMPKLNPINRAADLAALKEKFESPSPTNPTGRS-DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYF 318
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23 Identity = 61/149 (40.94%), Postives = 79/149 (53.02%), Query Frame = -2 Query: 143 TLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRR-EFPGNLQKVVRPR--------EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 562 T ++ +NP + AL W Q ++ PI+R + +K P + P DV + TADP KEPPL NT LS++A +YP EKLS YVSDDGG+ LT A EAA FA W+PFCRK + RNP +YF Sbjct: 312 TWRVKHQNPDAVWLWGMSVVCELWFALSWLLDQLPKLCPINRATDLQVLKEKFETPTASNPTGKSDLPGFDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHAIEPRNPDSYF 460
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.014e-22 Identity = 68/170 (40.00%), Postives = 86/170 (50.59%), Query Frame = -2 Query: 143 PIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPT--EKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 646 PIRRTA R+ + + ALL H V + MW + P+ FP NL + R E PA+D+ + TADP EPPL VNT LS++A DYP EKL+ YVSDDG S LT +A EAA+FA W+PFCR+ + R P YF Sbjct: 16 PIRRTAW-RLADLAILFLLLALLLHRV-------LHDSGAPWRRAALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAE--RIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYF 175 The following BLAST results are available for this feature:
BLAST of CN188704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188704 ID=CN188704; Name=CN188704; organism=Citrus sinensis; type=EST; length=725bpback to top |