CN188704
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.259e-21 Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 A W Q + PI+R + L + P + +DV + T DP KEPPL NT LS+++ DYP +K++ YVSDDG + LT + E A+FA W+PFC+KFN+ R P YF Sbjct: 315 AFSWLLDQFPKWYPINRETYLDRLAIRYDRDGEPSQLVPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVACYVSDDGSAMLTFESLSETAEFAKKWVPFCKKFNIEPRAPEFYF 433
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21 Identity = 57/146 (39.04%), Postives = 74/146 (50.68%), Query Frame = -2 Query: 143 IRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHR--------REFPGNLQKVVRPR-EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 553 IR NP V A W ++ P+HR F + + R + P +DV + +ADP KEPPL NT LS++A DYP EKL+ Y+SDDGG+ L+ A E A FA W+PFCRK + R P AYF Sbjct: 345 IRHPNPEAVWLWAMSVACEVWFAFSWLLDSLPKLCPVHRAADLAVLAERFESPTARNPKGRSDLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYF 490
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21 Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 A+ W Q + PI R + L +K +P +DV + T DP KEPPL NT LS++A DYP +K++ YVSDDG + LT A E A+FA W+PFC+K+ + R P YF Sbjct: 316 AVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSGLSPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYCIEPRAPEWYF 434
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 7.265e-21 Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 AL W Q + P++R + L + P + A+D+ + T DP KEPPL NT LS++A DYP +K+S YVSDDG + L+ + E ++FA W+PFC+K+++ R P YF Sbjct: 299 ALSWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLAETSEFARKWVPFCKKYSIEPRAPEWYF 417
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20 Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 A+ W Q + PI+R + L ++ + A+D + T DP KEPPL NT LS++A DYP +K+S YVSDDG + L+ + +E A FA W+PFC+K+++ R P YF Sbjct: 224 AVSWVLDQFPKWSPINRETYIDRLSARFEREGEQSQLAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLSFESLVETADFARKWVPFCKKYSIEPRAPEFYF 342
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3) HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20 Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = -2 Query: 143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPT--EKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394 E PA+D+L+ TADP EPPL VNT LS++A DYP E+L+ YVSDDG S LT A EAA FAA W+PFCR++ + R P YF Sbjct: 133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYF 218
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20 Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = -2 Query: 143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPT--EKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394 E PA+D+L+ TADP EPPL VNT LS++A DYP E+L+ YVSDDG S LT A EAA FAA W+PFCR++ + R P YF Sbjct: 133 ELPAVDMLVTTADPALEPPLVTVNTVLSLLALDYPRAGERLACYVSDDGCSPLTCHALREAAGFAAAWVPFCRRYGVAVRAPFRYF 218
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20 Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 A+ W Q + PI R + L K + + +D + T DP KEPPL NT LS++A DYP +K+S YVSDDG + LT A E ++FA W+PFC+K+++ R P YF Sbjct: 319 AMSWILDQFPKWFPIERETYLDRLTLRFDKEGQTSQLAPIDFFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKYSIEPRAPEWYF 437
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20 Identity = 47/119 (39.50%), Postives = 64/119 (53.78%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 AL W Q + P+ R + L ++ P +D + T DP KEPP+ NT LS++A DYP +++S YVSDDG S L E A+FA W+PFC+KF + R P YF Sbjct: 253 ALSWILDQLPKWSPVTRETYLDRLALRYERDGEPCRLAPIDFFVSTVDPLKEPPIITANTVLSILAVDYPVDRVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKFTIEPRAPEFYF 371
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20 Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = -2 Query: 143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487 A+ W Q + PI R + L K + + +D + T DP KEPPL NT LS++A DYP +K+S YVSDDG + LT A E ++FA W+PFC++++L R P YF Sbjct: 318 AMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436 The following BLAST results are available for this feature:
BLAST of CN188704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188704 ID=CN188704; Name=CN188704; organism=Citrus sinensis; type=EST; length=725bpback to top |