CN188704

Overview
NameCN188704
Unique NameCN188704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 48/119 (40.34%), Postives = 67/119 (56.30%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            A+ W   Q  +  PI R  +   L     K  +  +   +D  + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E ++FA  W+PFC++++L  R P  YF
Sbjct:  318 AMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKRYSLEPRAPEWYF 436          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            AL W   Q  +  PI+R  +   L    ++     +   +DV + T DP KEPP+   NT LS++A DYP  K+S YVSDDG S L      E ++FA  W+PFC+K+N+  R P  YF
Sbjct:  255 ALSWILDQFPKWFPINRETYLDRLSMRFERDGEKNKLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYF 373          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 59/178 (33.15%), Postives = 85/178 (47.75%), Query Frame = -2
Query:  143 PLNTTEPIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPRE----FPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 664
            P+  TE I+   L+    +++   I   L+       I  +NP                   W   Q  ++ PI+R      L++     +     P LD+ + TADP KEP LS  N+ LS++A DYP ++ + Y+SDD G  LT  A  EAAKFA  W+PFCRK  +  R P +YF
Sbjct:   91 PVFRTEKIKGVLLHPYRVLIFVRLIAFTLF---VIWRIEHKNPDAMWLWVTSIAGEFWFGFSWLLDQLPKLNPINRVPDLAVLRRRFDHADGTSSLPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYF 265          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 47/115 (40.87%), Postives = 67/115 (58.26%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            +L+W      +  P     +   L +  R  + P+LD+ + TAD  +E P+  VNT LS++A +YP  KL+ YVSDDG S LT F+  EA+KF   W PFC+K+N+  R P  YF
Sbjct:   62 SLVWLIFTCLKWSPAEDIPYINTLNE--RVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF 174          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = -2
Query:  143 WATTQAFRMRPIHRREFPGNLQKVVRPREFPAL---DVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 478
            W   Q  +  PI+R  +   L       E   L   D  + T DP KEPPL   NT LS++A DYP EK+S YVSDDG + LT  +  E A+FA  W+PFC+K+++  R P  YF
Sbjct:  232 WILDQFPKWCPINRETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 49/115 (42.61%), Postives = 64/115 (55.65%), Query Frame = -2
Query:  143 WATTQAFRMRPIHRREFPGNLQKVVRPREFPAL---DVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 478
            W   Q  +  PI+R  +   L       E   L   D  + T DP KEPPL   NT LS++A DYP EK+S YVSDDG + LT  +  E A+FA  W+PFC+K+++  R P  YF
Sbjct:  232 WILDQFPKWCPINRETYVDRLIARYGDGEDSGLAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.160e-18
Identity = 48/116 (41.38%), Postives = 66/116 (56.90%), Query Frame = -2
Query:  143 WATTQAFRMRPIHRREFPGNLQKVVRPRE----FPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 478
            W   Q  +++PI R      LQ+     +     P LDV I T DP  EP +  +N  LS++A DYP +K + Y+SDDGGS +     +E AKFAA W+PFCRK ++  R P +YF
Sbjct:  136 WLLNQVAKLKPIRRVPDLNLLQQQFDLPDGNSNLPGLDVFINTVDPINEPMIYTMNAILSILAADYPVDKHACYLSDDGGSIIHYDGLLETAKFAALWVPFCRKHSIEPRAPESYF 251          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 44/112 (39.29%), Postives = 63/112 (56.25%), Query Frame = -2
Query:  143 WATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 478
            W   QA ++ P+ R      L++       P +DV I T DP  EP L  +N+ LS++A DYP ++ + Y+SDDG S       +E A+FAA W+PFCRK  +  R P +YF
Sbjct:  122 WLLNQASKLNPVKRVPDLSLLRRRFDDGGLPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYF 233          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF2_ORYSJ (Mixed-linked glucan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLF2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394
            + P +DV + T DP  EP L  VNT LS++A DYP ++ + Y+SDDGG+ +   A +E AKFA  W+PFCRK  +  R+P  YF
Sbjct:  168 DLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 251          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF1_ORYSJ (Putative mixed-linked glucan synthase 1 OS=Oryza sativa subsp. japonica GN=CSFL1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.857e-17
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394
            + P +DV + T DP  EP L  VNT LS++A DYP ++ + Y+SDDGG+ +   A +E AKFA  W+PFCRK  +  R+P  YF
Sbjct:  138 DLPGVDVFVTTVDPVDEPILYTVNTILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRSPENYF 221          
The following BLAST results are available for this feature:
BLAST of CN188704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CESA5_ORYSI8.033e-2040.34Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA4_ARATH8.033e-2040.34Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CSLF6_ORYSJ1.789e-1933.15Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLB5_ARATH1.789e-1940.87Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CESA4_ORYSJ1.789e-1942.61Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI1.789e-1942.61Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CSLF8_ORYSJ1.160e-1841.38Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF9_ORYSJ9.819e-1839.29Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF2_ORYSJ2.857e-1747.62Mixed-linked glucan synthase 2 OS=Oryza sativa sub... [more]
CSLF1_ORYSJ2.857e-1747.62Putative mixed-linked glucan synthase 1 OS=Oryza s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188704 ID=CN188704; Name=CN188704; organism=Citrus sinensis; type=EST; length=725bp
CCCCCTGAGTTTTTTTTTTATTTATTATATATTGAAATATCATCATCACT
TTGCTATTTGAGATGCTACCATTATATTCTATTTATATGTATACCTTAAT
CTCGGAGCAACAAGCGTGGGTTGATGTGGATGATGATGAGGAGAAATATG
CATGAGGGTTTCTCTCCATAAGATTGAACTTCCTGCAAAAAGGTAACCAG
TGGGCTGCAAACTTAGCTGCCTCCATGAAAGCGAAGAGAGTAAGTGCCGA
TCCACCATCGTCCGATACATAAACCGAAAGCTTCTCCGTTGGATAGTCGT
AAGCCATCACCGATAAAGCCGTGTTCACAACACTGAGGGGCGGTTCCTTG
TAGGGATCCGCTGTGCATATAAGCACATCCAAAGCAGGAAATTCTCTCGG
TCTCACAACTTTTTGGAGGTTTCCGGGGAATTCCCTGCGATGAATAGGGC
GCATGCGAAAGGCCTGCGTGGTTGCCCACATCAAGGCTAGAATAACATCG
GACAGTAACAAACAGAAAGATACTACTAGCACCAAGGGGTTTCTGCCGCG
GATAGTTAGTGTTTCTACATGGTGATACAGTAGAGCAAATATGGCACACG
TGTAAACTACCGCGAACACACGGTTCAAGGCGGTCCGGCGGATGGGCTCC
GTCGTGTTAAGAGGAGGGATCTCGGTGCCGCTACTTTTGCCTCTCATTTC
TTTTTTGATGTGCTTATATCAGCCT
back to top