CN188704

Overview
NameCN188704
Unique NameCN188704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF4_ORYSJ (Mixed-linked glucan synthase 4 OS=Oryza sativa subsp. japonica GN=CSLF4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  143 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 394
            E P +DV + T DP  EP L  VN+ LS++A DYP ++ + Y+SDDGG+ +   A +E AKFA  W+PFCRK  +  R P +YF
Sbjct:  174 ELPGVDVFVTTVDPVDEPILYTVNSILSILAADYPVDRYACYLSDDGGTLVHYEAMVEVAKFAELWVPFCRKHCVEPRAPESYF 257          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  143 PALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 388
            P +DV + TADP  EP L  +N  LS++A DYP ++ + Y+SDD G+ +   A +E AKFA  W+PFCRK  +  R+P +YF
Sbjct:  168 PGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.312e-17
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  143 PALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 388
            P +DV + TADP  EP L  +N  LS++A DYP ++ + Y+SDD G+ +   A +E AKFA  W+PFCRK  +  R+P +YF
Sbjct:  168 PGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 45/120 (37.50%), Postives = 61/120 (50.83%), Query Frame = -2
Query:  143 LALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 490
            LA  W   Q  ++ P +R  +   L    +K         +DV +  AD  +EPPL+  NT LSV+A DYP   ++ YV DDG   L   +  EAA FA  W+PFCR+  +  R P  YF
Sbjct:   87 LAASWLIAQLPKLSPANRVTYLDRLASRYEKGGEASRLAGVDVFVAAADAAREPPLATANTVLSVLAADYPAGGVACYVHDDGADMLVFESLFEAAGFARRWIPFCRRHGVEPRAPELYF 206          
The following BLAST results are available for this feature:
BLAST of CN188704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLF4_ORYSJ3.731e-1747.62Mixed-linked glucan synthase 4 OS=Oryza sativa sub... [more]
CSLF3_ORYSJ8.312e-1746.34Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI8.312e-1746.34Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CESAB_ORYSJ1.418e-1637.50Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188704 ID=CN188704; Name=CN188704; organism=Citrus sinensis; type=EST; length=725bp
CCCCCTGAGTTTTTTTTTTATTTATTATATATTGAAATATCATCATCACT
TTGCTATTTGAGATGCTACCATTATATTCTATTTATATGTATACCTTAAT
CTCGGAGCAACAAGCGTGGGTTGATGTGGATGATGATGAGGAGAAATATG
CATGAGGGTTTCTCTCCATAAGATTGAACTTCCTGCAAAAAGGTAACCAG
TGGGCTGCAAACTTAGCTGCCTCCATGAAAGCGAAGAGAGTAAGTGCCGA
TCCACCATCGTCCGATACATAAACCGAAAGCTTCTCCGTTGGATAGTCGT
AAGCCATCACCGATAAAGCCGTGTTCACAACACTGAGGGGCGGTTCCTTG
TAGGGATCCGCTGTGCATATAAGCACATCCAAAGCAGGAAATTCTCTCGG
TCTCACAACTTTTTGGAGGTTTCCGGGGAATTCCCTGCGATGAATAGGGC
GCATGCGAAAGGCCTGCGTGGTTGCCCACATCAAGGCTAGAATAACATCG
GACAGTAACAAACAGAAAGATACTACTAGCACCAAGGGGTTTCTGCCGCG
GATAGTTAGTGTTTCTACATGGTGATACAGTAGAGCAAATATGGCACACG
TGTAAACTACCGCGAACACACGGTTCAAGGCGGTCCGGCGGATGGGCTCC
GTCGTGTTAAGAGGAGGGATCTCGGTGCCGCTACTTTTGCCTCTCATTTC
TTTTTTGATGTGCTTATATCAGCCT
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