CN181747

Overview
NameCN181747
Unique NameCN181747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = -1
Query:  111 AVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK--IEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 458
            AVA  KG   V GVV L Q +     +    +GL+PG HG+ ++EFGD T G +STG  +NP     G+ ++ +   GDLG +VA+ +G A  + V + + ++    ++GR+ VV+  ED    G
Sbjct:   62 AVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKG 186          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_DICDI (Probable copper chaperone for superoxide dismutase OS=Dictyostelium discoideum GN=ccs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 51/187 (27.27%), Postives = 78/187 (41.71%), Query Frame = -1
Query:   36 VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGS------------------------------VKEPLGDL-GTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTEDK------------------SDSG------VTAAVIARSAGVGENYKKICACDGT 431
            V+GV+RL + +      E   +GL PGKH   ++EFG+L  G    G  +   +E +                               KE L  + GT    + G+A F  + +     DLIGRSIV++  + K                  S+S       V   +I+R+A +G+N+KK+C CDGT
Sbjct:  127 VYGVIRLLRASTTKTLFEGRITGLKPGKHSLVVHEFGNLMNGCDDLGEPFISNVENNNNNNNNNNNNNNNNNNNNNNNNNNNKNINKCKEILNKIIGTSDVKQDGKAEFRVLSDKYDFWDLIGRSIVLHSQDSKYSPIEDLNNNNNNKNIVNSESDKILGERVACGIISRAASIGQNHKKVCPCDGT 313          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = -1
Query:  102 AVAEFKGPDVFGVVRLAQVNMEL-ARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSGVTA 458
            A+A  +G  V G++R  Q    L   +     GL+PG HG+ I+++GD T G +S G  +NP  K  G   + +   GDLG + A   G A  S   + +++     +IGRSIVV+  +D    GV A
Sbjct:    5 AIAVLRGDTVSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGA 132          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = -1
Query:  111 VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 431
            V G +   Q  +    +    SGL PGKHG+ I+E+GDLT G  S+G  +NP  +I G+ ++ +   GDLG + AD  G A  +    ++ +     +IGR++VV+  ED    G
Sbjct:   13 VKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKG 127          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS1_CANGA (Superoxide dismutase 1 copper chaperone OS=Candida glabrata GN=CCS1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 49/144 (34.03%), Postives = 76/144 (52.78%), Query Frame = -1
Query:   24 KGPDVFGVVRLAQVNMELARIEANFSGLS-PGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSVKEPLGDLGTLVADEKGEAFFSG---VKEVLRVADLIGRSIVVYGTEDKSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 443
            K   V G+ R+ QV+ +    +   +G+   GK+   I+  G++++G  STG VY        +EP+       A +  ++ +SG   V   L + DLIGRS V++   + +     A VIARSAGV EN K++CAC G  +WE
Sbjct:   95 KDTAVRGLARIVQVSDQKTLFDVTVNGVPFSGKYQAKIHSNGNISEGVKSTGDVYY-----KFEEPIECSD---ASDLDKSLYSGQNFVSAPLPIWDLIGRSFVIFREGEPAYD--IAGVIARSAGVWENDKQVCACTGKTVWE 228          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.712e-11
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = -1
Query:  111 VFGVVRLAQ-VNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP-KIEGSVKEP----LGDLGTLVADEKGEAFFSGVKEVLRV---ADLIGRSIVVYGTEDKSDSG 431
            V GVV+  Q  +     + A FSGL  GKHG+ ++EFGD T G  S G  +NP K E    E     +GDLG +VA   G A ++   +++ +     +IGR++V++  ED    G
Sbjct:   13 VKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRG 128          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = -1
Query:  111 AVAEFKG-PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK-----IEGSVKEPLGDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 458
            AVA  KG  +V GVV L+Q +     +    +GL+PG HG+ ++E+GD T G +STG  +NP        G      GDLG +VA+  G A  + V   + +     ++GR++VV+  ED    G
Sbjct:   68 AVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKG 192          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 44/139 (31.65%), Postives = 67/139 (48.20%), Query Frame = -1
Query:   78 LVSAAVAEFKGPDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSGVTAAVIARSAG 470
            +V A         V G     QV +    +  N SGL PG HG+ ++  GD T G +STG  YNP  K  G+ ++ +   GDLG +   E G A F+   + + +     +IGR++VV+   D  D G     +++S G
Sbjct:    1 MVKAVAVLNSSEGVSGTYLFTQVGVAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVHA--DPDDLGKGGHELSKSTG 137          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS1_ASHGO (Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii GN=CCS1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 53/154 (34.42%), Postives = 74/154 (48.05%), Query Frame = -1
Query:   24 SAAVAEFK-----GPDVFGVVRLAQVNMELARIEANFSGL-SPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSVKEPLGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTEDKSDSGVTAA-VIARSAGVGENYKKICACDGTIIWE 464
            SAAVA  +     GP V G+VR  QV       +   +GL  P ++  SI   GD+++GA STG  ++   +    E    LG  +    G A F      L V  LIGR  +V      + +G  A  V+ARSAG  +N K +CAC G  +W+
Sbjct:   79 SAAVAILESASAGGPPVRGLVRAVQVAPNKTLFDITLNGLPGPAQYYASIRASGDVSRGAASTGPAWHVFEDAVACERASPLGADLC--AGSALFVAP---LAVQALIGRGFLVGADRGHALAGAAAVGVLARSAGAWQNDKVVCACSGDTLWQ 227          
The following BLAST results are available for this feature:
BLAST of CN181747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SODCP_ORYSJ1.619e-1136.00Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
CCS_DICDI1.619e-1127.27Probable copper chaperone for superoxide dismutase... [more]
SODC_ONCVO3.608e-1134.38Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_HALRO3.608e-1134.78Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
CCS1_CANGA3.608e-1134.03Superoxide dismutase 1 copper chaperone OS=Candida... [more]
SODC_SCHMA4.712e-1136.21Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODCP_SOLLC6.154e-1135.20Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC1_SOLLC6.154e-1131.65Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
CCS1_ASHGO8.037e-1134.42Superoxide dismutase 1 copper chaperone OS=Ashbya ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181747 ID=CN181747; Name=CN181747; organism=Citrus sinensis; type=EST; length=473bp
GCGACGAAATCATTGCTACTTGACTCCCAAATGATGGTTCCATCACAAGC
GCAAATCTTTTTGTAGTTCTCACCAACTCCTGCACTTCTAGCAATTACCG
CTGCTGTGACACCTGAATCTGATTTATCTTCAGTACCATATACCACAATG
GATCGCCCAATCAGATCAGCAACTCTCAGCACCTCTTTGACACCTGAGAA
GAAGGCCTCACCTTTCTCATCAGCAACTAGTGTTCCCAGGTCACCAAGTG
GCTCTTTCACACTTCCTTCAATCTTTGGATTATAAACTCTGCCAGTGCTC
ACTGCACCTTTTGTCAGATCACCAAATTCATTAATAGACCAGCCATGTTT
TCCAGGTGAAAGCCCACTAAAGTTGGCTTCAATCCTAGCCAATTCCATAT
TCACTTGAGCCAAGCGAACCACACCAAATACATCTGGACCTTTGAATTCA
GCAACGGCAGCGGAGACTAAAAA
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