CN181746

Overview
NameCN181746
Unique NameCN181746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18
Identity = 64/196 (32.65%), Postives = 99/196 (50.51%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+  ++E+ R+                     T   K++I+    L+ + +    +RV+ HT   K  G+ +KK  ++EI+V G SVA+K+ +A
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYA 175          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 62/194 (31.96%), Postives = 97/194 (50.00%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYA 175          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ETPP+          TP G + L  VWA   +E + R                        D   D    +E +  +    IRV+ HT      G+ +K   +ME +V GG++A +++FA
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFA 176          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ETPP+          TP G + L  VWA   +E + R                        D   D    +E +  +    IRV+ HT      G+ +K   +ME +V GG++A +++FA
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFA 176          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 62/194 (31.96%), Postives = 97/194 (50.00%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ETP +         KT +GL++L  VWA+ L+ ++ R+                       + KK   A L+ + +  T +R + HT   K  G+ +KK  ++EI++ G SVA+++ +A
Sbjct:    4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYA 175          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18
Identity = 57/194 (29.38%), Postives = 97/194 (50.00%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K+  PR GSL F PRKRA     +++A+P+ D     R+  F GYKAGMTH+V   ++  S  + +E    VT+IETPP+         KT  G++    VW+ +L++ + RR                         + D++     ++   + +RV+ +TQ   + G+ +K   +ME ++ GG+V + +D+A
Sbjct:    2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYA 172          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMK---KYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            +   PR GS+ F PRKRA+R   +VK++P+ D+P     L A  GYKAGMTH++    +  S     E    VTI+E PPL         KT RGL++L  V A    +++RR+                      DD   D +A +EK++   +Y   +RV+ HT  R +  + +KK  + E  + G +  +K ++A
Sbjct:    3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL-----------------TPPADD--YDQEAAIEKIRSNMEYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYA 176          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17
Identity = 60/190 (31.58%), Postives = 88/190 (46.32%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            PR GSLGF PRKR++    +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IETPP+          TP G R L  VW    + E+ R                     + D  ++ I+   E        +R++ HT    +  + +KK  +ME +V GGSV+ ++D A
Sbjct:    7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-------------DVPEDHDPDAAEEQIRDAHEAGD--LGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHA 179          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17
Identity = 67/202 (33.17%), Postives = 94/202 (46.53%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY---KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY-----CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL F PRKRA     ++K +PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E PPL         +   GL +   VW   LN+ V+RR     KN+                   G++D +A+L +++          +R+L HTQ   +K   +KK  +ME  + G  V  K ++A
Sbjct:    3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY-------------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYA 179          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.137e-17
Identity = 58/191 (30.37%), Postives = 96/191 (50.26%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            PR GSL F PRKRA R   +++++P++D     RL AF  YKAGM+H     + P S    +E    +TI+E PP+         +  R  L +L  VWA +L++E+ R+                       + +K ++  LE +K     +RVL HT   K+  L +KK  ++EI++ G  + +++++A
Sbjct:    8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYA 176          
The following BLAST results are available for this feature:
BLAST of CN181746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_METVA1.275e-1832.6550S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METM52.175e-1831.9650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_HALSA2.175e-1831.9450S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS32.175e-1831.9450S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_METM63.710e-1831.9650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_ARCFU6.328e-1829.3850S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METTH1.841e-1731.8250S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_HALMA1.841e-1731.5850S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_THEGJ3.140e-1733.1750S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_METJA9.137e-1730.3750S ribosomal protein L3P OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181746 ID=CN181746; Name=CN181746; organism=Citrus sinensis; type=EST; length=655bp
GAGGATTTGCTATCACTTCGCTCCTTCAGCAACGCAAGAGTTCTAAGTGC
CGAGTAGGATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTA
GGATTTCTTCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGC
CTTTCCCAAGGATGACCCATCAAAACCATGCAGATTAACTGCTTTTTTAG
GCTACAAAGCTGGAATGACCCATATTGTCAGAGATGTTGAAAAGCCAGGA
TCAAAGCTGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAAC
ACCACCCCTGGTGGTTGTTGGGGTCGTTGGTTATGTCAAGACGCCCCGTG
GGCTTCGTTCTCTCTGCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTT
AGGAGAAGGTTTTACAAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCAC
TAAGTATACAAAGAAGTATGAAACTGATGATGGAAAGAAAGACATTCAGG
CTCAGCTGGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCC
CATACCCAGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCT
GATGGAGATCCAGGTCAATGGTGGATCAGTTGCCCAGAAAGTTGACTTTG
CTTAT
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