CN181746
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18 Identity = 64/196 (32.65%), Postives = 99/196 (50.51%), Query Frame = 2 Query: 71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQA--QLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ETP + KT +GL++L VWA+ ++E+ R+ T K++I+ L+ + + +RV+ HT K G+ +KK ++EI+V G SVA+K+ +A Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------------TVTKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYA 175
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18 Identity = 62/194 (31.96%), Postives = 97/194 (50.00%), Query Frame = 2 Query: 71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ETP + KT +GL++L VWA+ L+ ++ R+ + KK A L+ + + T +R + HT K G+ +KK ++EI++ G SVA+++ +A Sbjct: 4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDGDLGRKL-----------------TLAKKEEKKTADA-LDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYA 175
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18 Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 2 Query: 83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ETPP+ TP G + L VWA +E + R D D +E + + IRV+ HT G+ +K +ME +V GG++A +++FA Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFA 176
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18 Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 2 Query: 83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKM-KKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 PR GS+GF PRKRA + ++P DD L F GYKAGMTH+V +K + ET VT++ETPP+ TP G + L VWA +E + R D D +E + + IRV+ HT G+ +K +ME +V GG++A +++FA Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL-------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFA 176
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18 Identity = 62/194 (31.96%), Postives = 97/194 (50.00%), Query Frame = 2 Query: 71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 K PR GSL F PRKRA + K++++P D K L AF YKAG TH + P S + +E VT++ETP + KT +GL++L VWA+ L+ ++ R+ + KK A L+ + + T +R + HT K G+ +KK ++EI++ G SVA+++ +A Sbjct: 4 KKSRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLIENNPKSPNNGQEVFTPVTVLETPDVTVAGIRLYEKTTKGLQALTEVWAEQLDGDLGRKL-----------------TLVKKEEKKTADA-LDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYA 175
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.328e-18 Identity = 57/194 (29.38%), Postives = 97/194 (50.00%), Query Frame = 2 Query: 71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 K+ PR GSL F PRKRA +++A+P+ D R+ F GYKAGMTH+V ++ S + +E VT+IETPP+ KT G++ VW+ +L++ + RR + D++ ++ + +RV+ +TQ + G+ +K +ME ++ GG+V + +D+A Sbjct: 2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYA 172
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17 Identity = 63/198 (31.82%), Postives = 97/198 (48.99%), Query Frame = 2 Query: 71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMK---KYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 + PR GS+ F PRKRA+R +VK++P+ D+P L A GYKAGMTH++ + S E VTI+E PPL KT RGL++L V A +++RR+ DD D +A +EK++ +Y +RV+ HT R + + +KK + E + G + +K ++A Sbjct: 3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL-----------------TPPADD--YDQEAAIEKIRSNMEYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYA 176
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 89.3521 bits (220), Expect = 1.841e-17 Identity = 60/190 (31.58%), Postives = 88/190 (46.32%), Query Frame = 2 Query: 83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 PR GSLGF PRKR++ + ++P DD + F GYKAGMTH+V ++P S E VT+IETPP+ TP G R L VW + E+ R + D ++ I+ E +R++ HT + + +KK +ME +V GGSV+ ++D A Sbjct: 7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-------------DVPEDHDPDAAEEQIRDAHEAGD--LGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHA 179
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.140e-17 Identity = 67/202 (33.17%), Postives = 94/202 (46.53%), Query Frame = 2 Query: 71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY---KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY-----CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 K PR GSL F PRKRA ++K +PKD R+ F GYKAGMTHI+ + PG KE VTI+E PPL + GL + VW LN+ V+RR KN+ G++D +A+L +++ +R+L HTQ +K +KK +ME + G V K ++A Sbjct: 3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY-------------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYA 179
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.137e-17 Identity = 58/191 (30.37%), Postives = 96/191 (50.26%), Query Frame = 2 Query: 83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 PR GSL F PRKRA R +++++P++D RL AF YKAGM+H + P S +E +TI+E PP+ + R L +L VWA +L++E+ R+ + +K ++ LE +K +RVL HT K+ L +KK ++EI++ G + +++++A Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYA 176 The following BLAST results are available for this feature:
BLAST of CN181746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN181746 ID=CN181746; Name=CN181746; organism=Citrus sinensis; type=EST; length=655bpback to top |