CN181746

Overview
NameCN181746
Unique NameCN181746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2280 contig Csv1_Contig2280:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.905e-14
Identity = 60/208 (28.85%), Postives = 97/208 (46.63%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCT-VWAQHLNE--EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQ----AQLEKMKKYCTVI---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            M HRK   PR GS G  PRKR+S      + +P+ +   P +L  F+GYK GM+H+    + P S  + KE    VT++E PP+            +G  ++ T  W+    +  ++ RR +                  + D+ KK  +    ++L+ +K     I   R+L  TQ RK+  L +K   L+EIQ+ GG    ++D+A
Sbjct:    1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------FSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYA 195          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.488e-14
Identity = 51/191 (26.70%), Postives = 87/191 (45.55%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV--IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDF 649
            PR GS+GF PRKRA     +++++  +D +   +   F GYKAGMT ++   ++  S     E    VT++ETPP+          TP G + L  VW +  +  + R                       +D  +D  A L    +   +  +R++ HT    M+ + +K   +ME +V GG++  +V+F
Sbjct:    7 PRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSPREGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-----------------DLPNEDTFEDDAAALRDDAETGDIDDVRLITHTLPAGMRNIPKKTPDVMETRVGGGTLTDRVEF 178          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.244e-14
Identity = 61/197 (30.96%), Postives = 96/197 (48.73%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTP-RGLR-SLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFA 652
            K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++ PPL           P  G + ++   W      ++RR                     E  D +K ++A LE+ +     +RVL  TQ R + G+ +K   ++EI V G  S+ ++++FA
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVAAVRLYTLDPTNGYKVAVGEAWVSEPPADLRR----------------VLTLPEKFDTEKQLKA-LEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVLEIPVGGVPSIDERINFA 181          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 49/191 (25.65%), Postives = 88/191 (46.07%), Query Frame = 2
Query:   80 HPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            H R GS+ + PR RA R +G ++++P+ +     ++ AF GYK GMTHI     +  S    +     VT++E PPL         +   GL  +   WA++++++V RR  K                   +  KK I+       K    +R++ HT  + + G+  K   + EI++ G ++  ++ +A
Sbjct:    6 HSRRGSMAYYPRVRAKRIQGDIRSWPEIEGQT--KVQAFAGYKVGMTHIQMVDYRKNSVTAGQVIMAPVTVVEVPPLTVMSIRYYARGDNGLEVISEEWAENIDKDVLRRINK------------------INRHKKGIEV------KDVDDVRLMVHTNPQLVSGVPSKTPEIFEIRIGGSTIENRIKYA 170          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 55/197 (27.92%), Postives = 91/197 (46.19%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYC---TVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL F PRKRA R   K++++P+ +  K   L AF  YKAG TH +     P S    ++    VT++E P +         K  +GL++L  VWA   ++E+ R+                       +  K+ +A  EK+ +       +R + HT   K   L +KK  ++EI++ G +++  + +A
Sbjct:    4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNADQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKI----------------------NLPKEPKANTEKLDEVADKIVEVRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYA 174          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.107e-13
Identity = 54/199 (27.14%), Postives = 85/199 (42.71%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY-----CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIETP +         K   G  ++   W   L++++ RR                           D+ A LEK++          IR++ +T    + G+ +K   +ME  V+G  V  K ++A
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYA 179          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.751e-13
Identity = 59/186 (31.72%), Postives = 88/186 (47.31%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTP--RGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNG 622
            K   PR GS+ + PRKRAS    +++ +P  D  KP  L  F+GYKAGM H+    ++  S    KE  +AVT++ETPPL           P    L S+   W  ++  EVR+   +                 +TD    D+Q  L+ +    + I+V+A TQ  K  G+ +K   ++EI V G
Sbjct:    4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRKYIARR--------IPTLPEKFDTDKALADLQGLLDSV----SYIKVIAMTQPYK-AGVGKKTPEVLEIPVGG 174          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 53/192 (27.60%), Postives = 85/192 (44.27%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV--IRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIETP +         +   G +++  VWA  L+ E++RR                       D   +    + KM +   V  IR + +T  + + G+ +K   +ME  ++   +  K ++A
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-----------------PVPKGDNMAETLGNIGKMIEEGKVSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYA 179          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 50/194 (25.77%), Postives = 89/194 (45.88%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL + PRKRA     +  ++P+   +   +   F GYK GMTH++   +   S    K+    VT++E PP+         +   G  +L   W   L+EE+ RR                    +T    + ++A + + K   + +  LA+T+  ++ G+ +K   LME+++ GGS+  ++ +A
Sbjct:    3 KINRPRRGSLAYSPRKRAKSPVPRYGSWPEYTGAPAVQ--GFAGYKVGMTHVIMVDDHKSSPTEGKDVMVPVTVVEVPPMRVAGVRAYGEDTYGKHALTEAWTTDLDEELSRRI-------------NVPKNHDTAAALEAVKAAVGEGK--VSELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYA 179          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 49/190 (25.79%), Postives = 88/190 (46.32%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++   WA  L+ E++RR                       +G ++I   +E+ +   + IR + +T  + + G+ +K   +ME  ++   +  K ++A
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYA 179          
The following BLAST results are available for this feature:
BLAST of CN181746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_SULIK1.905e-1428.8550S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_HALWD2.488e-1426.7050S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]
RL3_PYRCJ4.244e-1430.9650S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_PICTO5.543e-1425.6550S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_META39.456e-1427.9250S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_METBU2.107e-1327.1450S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_CALMQ2.751e-1331.7250S ribosomal protein L3P OS=Caldivirga maquilinge... [more]
RL3_METBF3.593e-1327.6050S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_METMJ6.129e-1325.7750S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_METMA1.365e-1225.7950S ribosomal protein L3P OS=Methanosarcina mazei ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181746 ID=CN181746; Name=CN181746; organism=Citrus sinensis; type=EST; length=655bp
GAGGATTTGCTATCACTTCGCTCCTTCAGCAACGCAAGAGTTCTAAGTGC
CGAGTAGGATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTA
GGATTTCTTCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGC
CTTTCCCAAGGATGACCCATCAAAACCATGCAGATTAACTGCTTTTTTAG
GCTACAAAGCTGGAATGACCCATATTGTCAGAGATGTTGAAAAGCCAGGA
TCAAAGCTGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAAC
ACCACCCCTGGTGGTTGTTGGGGTCGTTGGTTATGTCAAGACGCCCCGTG
GGCTTCGTTCTCTCTGCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTT
AGGAGAAGGTTTTACAAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCAC
TAAGTATACAAAGAAGTATGAAACTGATGATGGAAAGAAAGACATTCAGG
CTCAGCTGGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCC
CATACCCAGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCT
GATGGAGATCCAGGTCAATGGTGGATCAGTTGCCCAGAAAGTTGACTTTG
CTTAT
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