CN181746
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12 Identity = 56/193 (29.02%), Postives = 89/193 (46.11%), Query Frame = 2 Query: 83 PRHGSLGFLPRKRASRHRGKVKAFP--KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRR--FYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDF 649 PR GSL + PRKRA K A+P + +P+ L F GYK GMTH++ + S K+ VT+IE P + G L VWA ++E+ RR KN+ + ++ +K I+ LE K V L +T+ + G+ +K LME +++GGS+ ++ ++ Sbjct: 7 PRMGSLAYSPRKRAKSPVPKYHAWPAYQGEPA----LQGFAGYKVGMTHVIMVDDHAHSPNEGKDIMVPVTVIEVPDMRVAAIRVYRHDTYGNHVLTEVWADSFDKELSRRLNLSKNY---------------KREEAEKKIREALEADKIVDVV--ALTYTRPSVLTGVPKKVPDLMETRIDGGSMTERFEY 178
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12 Identity = 57/193 (29.53%), Postives = 90/193 (46.63%), Query Frame = 2 Query: 83 PRHGSLGFLPRKRASRHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNE-EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652 PR GSLG+ PR RA + K++ + + D P ++ F+G+KAGM+HIV ++P S E VTI+E P + +P G + + W L E KN +TD+ I A+L K K +RV+ T ++ G+ +K LME ++ GG +A++ +FA Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFA 179
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12 Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 2 Query: 83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRR 409 P+ GSL F PRKRA H + +A+P + + +L +F GYK GMTH++ + S E VT+IETP + + G +++ VWA L+ E++RR Sbjct: 7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRR 113
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11 Identity = 63/205 (30.73%), Postives = 87/205 (42.44%), Query Frame = 2 Query: 71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHL---NEEVRRR---------FYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDF 649 K PR GSLGF PRKRA +++++PK+ R+ F GYKAGMTHI+ ++PG + KE VTIIETPPL GL + V N + R FYK T + + QLE M K ++ V A + +KK +ME + G SV +K ++ Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKMTFYK-----LLERRIATLPKNYTQEMFEQKLGQLEDMIKEGEIVDVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 198 The following BLAST results are available for this feature:
BLAST of CN181746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181746 ID=CN181746; Name=CN181746; organism=Citrus sinensis; type=EST; length=655bpback to top |