CN181746

Overview
NameCN181746
Unique NameCN181746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2280 contig Csv1_Contig2280:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 56/193 (29.02%), Postives = 89/193 (46.11%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFP--KDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRR--FYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDF 649
            PR GSL + PRKRA     K  A+P  + +P+    L  F GYK GMTH++   +   S    K+    VT+IE P +             G   L  VWA   ++E+ RR    KN+               + ++ +K I+  LE  K    V   L +T+   + G+ +K   LME +++GGS+ ++ ++
Sbjct:    7 PRMGSLAYSPRKRAKSPVPKYHAWPAYQGEPA----LQGFAGYKVGMTHVIMVDDHAHSPNEGKDIMVPVTVIEVPDMRVAAIRVYRHDTYGNHVLTEVWADSFDKELSRRLNLSKNY---------------KREEAEKKIREALEADKIVDVV--ALTYTRPSVLTGVPKKVPDLMETRIDGGSMTERFEY 178          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 57/193 (29.53%), Postives = 90/193 (46.63%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNE-EVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            PR GSLG+ PR RA   + K++ + +  D P    ++  F+G+KAGM+HIV   ++P S     E    VTI+E P +          +P G + +   W   L   E      KN                +TD+    I A+L K K     +RV+  T   ++ G+ +K   LME ++ GG +A++ +FA
Sbjct:    7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFA 179          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRR 409
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IETP +         +   G +++  VWA  L+ E++RR
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRR 113          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.510e-11
Identity = 63/205 (30.73%), Postives = 87/205 (42.44%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHL---NEEVRRR---------FYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDF 649
            K   PR GSLGF PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIETPPL             GL +   V        N   + R         FYK                  T +  +    QLE M K   ++ V A    +      +KK  +ME  + G SV +K ++
Sbjct:    3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKMTFYK-----LLERRIATLPKNYTQEMFEQKLGQLEDMIKEGEIVDVRAIVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 198          
The following BLAST results are available for this feature:
BLAST of CN181746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_METHJ2.329e-1229.0250S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_UNCMA6.776e-1229.5350S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METAC6.776e-1234.8650S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_PYRFU1.510e-1130.7350S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181746 ID=CN181746; Name=CN181746; organism=Citrus sinensis; type=EST; length=655bp
GAGGATTTGCTATCACTTCGCTCCTTCAGCAACGCAAGAGTTCTAAGTGC
CGAGTAGGATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTA
GGATTTCTTCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGC
CTTTCCCAAGGATGACCCATCAAAACCATGCAGATTAACTGCTTTTTTAG
GCTACAAAGCTGGAATGACCCATATTGTCAGAGATGTTGAAAAGCCAGGA
TCAAAGCTGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAAC
ACCACCCCTGGTGGTTGTTGGGGTCGTTGGTTATGTCAAGACGCCCCGTG
GGCTTCGTTCTCTCTGCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTT
AGGAGAAGGTTTTACAAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCAC
TAAGTATACAAAGAAGTATGAAACTGATGATGGAAAGAAAGACATTCAGG
CTCAGCTGGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCC
CATACCCAGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCT
GATGGAGATCCAGGTCAATGGTGGATCAGTTGCCCAGAAAGTTGACTTTG
CTTAT
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