CN181745

Overview
NameCN181745
Unique NameCN181745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  273 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  273 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  273 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 2.082e-33
Identity = 68/121 (56.20%), Postives = 87/121 (71.90%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKI+++G+           ++A T +D T K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQ  QEK  + G  K
Sbjct:  273 GYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.719e-33
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  273 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.719e-33
Identity = 68/115 (59.13%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RT +N K+Y++GK   E+++A TEFDRT+K ITPMGGF HYG +N D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  271 GYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.719e-33
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIYK+G+           ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  273 GYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 3.551e-33
Identity = 67/115 (58.26%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RT +N KIY++GK   E++ A T FDRT+K ITPMGGF HYG +  D++++KGC  G +KR+VTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  271 GYHSRTSINHKIYRVGKGDDEANGA-TSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RT +N KIY++GK   E ++A T FDRT+K I PMGGF HYG+VN D++++KG   G KKRVVTLR+SL   TSR A+EE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  271 GYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.340e-31
Identity = 66/116 (56.90%), Postives = 84/116 (72.41%), Query Frame = -3
Query:  191 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA 538
            G+H RTE NK++Y +G  S    +  TEFD TEK I+PMGGFPHYG V  D++++KG  VG +KRVVTLR+SLL+Q    A EE+ +KF+DTSSK GHGRFQ + EK  +YG  KA
Sbjct:  267 GFHRRTEKNKRVYMIGNGSS---NIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
The following BLAST results are available for this feature:
BLAST of CN181745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL3_RAT2.082e-3357.0260S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_MOUSE2.082e-3357.0260S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_BOVIN2.082e-3357.0260S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3L_HUMAN2.082e-3356.2060S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_MACFA2.719e-3357.0260S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_KLULA2.719e-3359.1360S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3_HUMAN2.719e-3357.0260S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_YEAST3.551e-3358.2660S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3_CANGA2.301e-3259.1360S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_ENCCU4.340e-3156.9060S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181745 ID=CN181745; Name=CN181745; organism=Citrus sinensis; type=EST; length=543bp
TAAAGCCAAAAATACCGTAAGATGTATTAACGCGCAAAAAAGAAACCATG
CACAAATGAAGTTTCAAAGAACTGCCAATGTAGCCATAGCCATATTAATT
CAAAATAGAGACTAGAATGACCAACAATCTTAGATGTTCAAAACTACCCT
GAAACCAAAGGCAATCTCTTTTTCAACTTGGCCAAAATCAAGCCTTGAGC
CTTCCATAGTACTTGGCCTTCTCCTGAGTTCTCTGGAACCGACCATGGCC
GAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAATGCAA
GCCTAGACGTCTGCTTCAGTAGGGACTGCCTCAAGGTCACAACACGCTTC
TTAGGTCCAACACAGCATCCCTTGATCAGCAGGTAATCTTCATTGACTAC
ACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGTCCTGT
CAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAAGCTTG
TAAATTTTCTTGTTCATCTCTGTACGGGGATGGTAGCCGTTCT
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