CN181745

Overview
NameCN181745
Unique NameCN181745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 31/95 (32.63%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  254 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 538
            G+H RTE NK++  +G+      +     +  E DITP GGFPHYG++  D+L+I+G   G  KR++ +R ++     +  +E  ++ ++   SK
Sbjct:  257 GFHHRTEFNKRLIAIGE------NGKLVLNGNEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 30/95 (31.58%), Postives = 56/95 (58.95%), Query Frame = -3
Query:  254 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 538
            G+H RTE+NK++  +G+     +  +   + TE +ITP GGFPHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  275 GFHHRTELNKRLIAIGE-----NGKLKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = -3
Query:  248 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKD-ITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 538
            GYH RTE NKK+ K+G             D +E D I P GGF  YG V  +Y+L+KG   GP KR+V LR+ +   + ++   EI   +I T+SK G
Sbjct:  254 GYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPEI--SYISTTSKQG 336          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 40/98 (40.82%), Postives = 51/98 (52.04%), Query Frame = -3
Query:  245 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 538
            G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR S+     +  L EI   +I T SK G+
Sbjct:  253 GFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEI--AYISTESKQGN 334          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = -3
Query:  248 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 538
            GYH RTE NK+I K+G   +E              +TP GGF +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  + +I   SK G
Sbjct:  257 GYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 30/95 (31.58%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  254 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 538
            G+H RTE+NK++  +G+      +     D  E +ITP GGFPHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  272 GFHHRTELNKRLIAIGE------NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 38/97 (39.18%), Postives = 52/97 (53.61%), Query Frame = -3
Query:  248 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 538
            GYH RTE NK+I K+G   +E              +TP GGF +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  + +I   SK G
Sbjct:  257 GYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = -3
Query:  245 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 538
            G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  253 GFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = -3
Query:  245 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 538
            G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  253 GFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = -3
Query:  245 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 538
            G+H RTE NK+I KLG    E              ITP GGF +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  253 GFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
The following BLAST results are available for this feature:
BLAST of CN181745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL3_THEGJ2.925e-1132.6350S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_PYRFU2.925e-1131.5850S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]
RL3_METST2.925e-1140.8250S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_METMP3.820e-1140.8250S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METAC3.820e-1139.1850S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_PYRAB4.989e-1131.5850S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]
RL3_METMA4.989e-1139.1850S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METM74.989e-1139.8050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM64.989e-1139.8050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM54.989e-1139.8050S ribosomal protein L3P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181745 ID=CN181745; Name=CN181745; organism=Citrus sinensis; type=EST; length=543bp
TAAAGCCAAAAATACCGTAAGATGTATTAACGCGCAAAAAAGAAACCATG
CACAAATGAAGTTTCAAAGAACTGCCAATGTAGCCATAGCCATATTAATT
CAAAATAGAGACTAGAATGACCAACAATCTTAGATGTTCAAAACTACCCT
GAAACCAAAGGCAATCTCTTTTTCAACTTGGCCAAAATCAAGCCTTGAGC
CTTCCATAGTACTTGGCCTTCTCCTGAGTTCTCTGGAACCGACCATGGCC
GAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAATGCAA
GCCTAGACGTCTGCTTCAGTAGGGACTGCCTCAAGGTCACAACACGCTTC
TTAGGTCCAACACAGCATCCCTTGATCAGCAGGTAATCTTCATTGACTAC
ACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGTCCTGT
CAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAAGCTTG
TAAATTTTCTTGTTCATCTCTGTACGGGGATGGTAGCCGTTCT
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