CN181745

Overview
NameCN181745
Unique NameCN181745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 39/97 (40.21%), Postives = 49/97 (50.52%), Query Frame = -3
Query:  248 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 538
            GYH RTE NKKI K+  A +               I P GGF  YG+V  DY+L+KG   GP KR+V LRQ +        + +I   +I T SK G
Sbjct:  253 GYHKRTEFNKKILKIASADEVDQ------------INPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPIRPNNKSEDMPQI--NYISTKSKQG 335          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 30/95 (31.58%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  254 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 538
            G+H RTE+NK++  +G+      +     D  E +ITP GGFPHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  273 GFHHRTELNKRLIAIGE------NGKLVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  248 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 538
            GYH RTE NK+I K+G AS+               + P GGF  YG+V  DY++IKG   GP KR+V LR+++  + +    E  ++ +I T+SK G
Sbjct:  254 GYHRRTEYNKQILKIGDASEADL------------VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336          
The following BLAST results are available for this feature:
BLAST of CN181745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL3_METS36.516e-1140.2150S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_PYRHO8.510e-1131.5850S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]
RL3_METTH8.510e-1139.1850S ribosomal protein L3P OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181745 ID=CN181745; Name=CN181745; organism=Citrus sinensis; type=EST; length=543bp
TAAAGCCAAAAATACCGTAAGATGTATTAACGCGCAAAAAAGAAACCATG
CACAAATGAAGTTTCAAAGAACTGCCAATGTAGCCATAGCCATATTAATT
CAAAATAGAGACTAGAATGACCAACAATCTTAGATGTTCAAAACTACCCT
GAAACCAAAGGCAATCTCTTTTTCAACTTGGCCAAAATCAAGCCTTGAGC
CTTCCATAGTACTTGGCCTTCTCCTGAGTTCTCTGGAACCGACCATGGCC
GAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAATGCAA
GCCTAGACGTCTGCTTCAGTAGGGACTGCCTCAAGGTCACAACACGCTTC
TTAGGTCCAACACAGCATCCCTTGATCAGCAGGTAATCTTCATTGACTAC
ACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGTCCTGT
CAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAAGCTTG
TAAATTTTCTTGTTCATCTCTGTACGGGGATGGTAGCCGTTCT
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