CN181741

Overview
NameCN181741
Unique NameCN181741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig795 contig Csv1_Contig795:23..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 414.846 bits (1065), Expect = 2.541e-115
Identity = 196/239 (82.01%), Postives = 213/239 (89.12%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+HIQGGQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRTLKL+TP++GDLNHL+SA +SGVTCC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMATFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAGISGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.662e-115
Identity = 195/239 (81.59%), Postives = 214/239 (89.54%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+H+QGGQCGNQIG+KFWEV+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRTLKL+TP++GDLNHL+SA +SGVT C
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTSC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.662e-115
Identity = 196/239 (82.01%), Postives = 209/239 (87.45%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREILH+Q GQCGNQIG KFWEVV  EHGIDP G Y G + +QLER+NVYYNEAS GRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNF+FGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAENC CLQGFQ+CH              ISKI+EEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVEN DECMVLDNEALYDICFRTLKL+ PSFGDLN LIS TMSG TCC
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVVSDEHGIDPKGNYVGTSRVQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPHGQLFRPDNFIFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCACLQGFQICHSLGGGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGATCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 9.657e-115
Identity = 193/239 (80.75%), Postives = 214/239 (89.54%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+H+QGGQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINV+YNEA+ GR+VPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL+TP++GDLNHL+SA MSGVTCC
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGDSDLQLERINVFYNEATGGRFVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 412.535 bits (1059), Expect = 1.261e-114
Identity = 194/239 (81.17%), Postives = 214/239 (89.54%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+H+QGGQCGNQIG+KFWEV+  EHG++PTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRTLKL+TP++GDLNHL+SA +SGVT C
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVEPTGAYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTAC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 409.838 bits (1052), Expect = 8.176e-114
Identity = 189/239 (79.08%), Postives = 213/239 (89.12%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+ +Q GQCGNQIGSKFWEV+  EHG+DPTG YQGD+DLQLERINVY++EA+ GRYVPRAVL+DLEPGTMDSVR+GPYGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDV RKEAE+CDCLQGFQ+CH              ISK+REEYPDR+M+TFS+ PSPKVSDTVVEPYN TLSVHQLVEN+DE M +DNEALYDICFRTLKL+TP+FGDLNHL+SA +SGVTCC
Sbjct:    1 MREIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQLERINVYFDEATGGRYVPRAVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDICFRTLKLTTPTFGDLNHLVSAVVSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 409.453 bits (1051), Expect = 1.068e-113
Identity = 194/238 (81.51%), Postives = 213/238 (89.50%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTC 766
            MREI+H+QGGQCGNQIG+KFWEV+  EHGI PTG Y+GD+DLQLERI+V+YNEA+ GRYVPRAVLMDLEPGTMDSVRSGP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV H              ISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL+TP++GDLNHL+SA MSGVTC
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGDSDLQLERISVFYNEATGGRYVPRAVLMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQVTHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTC 238          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 409.068 bits (1050), Expect = 1.395e-113
Identity = 192/239 (80.33%), Postives = 212/239 (88.70%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+HIQ GQCGNQIG+KFWEV+  EHGIDPTG Y G++DLQLERINVYYNEA+ G+YVPRAVL+DLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDI FRTLKL+TP++GDLNHL+SA MSG+TCC
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGESDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDISFRTLKLTTPTYGDLNHLVSAVMSGITCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB4_OOMCK (Tubulin beta-4 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB4 PE=3 SV=1)

HSP 1 Score: 408.683 bits (1049), Expect = 1.821e-113
Identity = 195/237 (82.28%), Postives = 211/237 (89.03%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 763
            MREI+HIQGGQCG+QIG+KFWEV+  EHGIDPTG Y GD+DLQLER+NVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV H              ISKIREEYPDR+M+TFSV PSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFRTLKL+TP++GDLNHL+   MSGVT
Sbjct:    1 MREIVHIQGGQCGDQIGAKFWEVISDEHGIDPTGTYNGDSDLQLERVNVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEQCDCLQGFQVTHSLGGGTGSGMGTLLISKIREEYPDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRTLKLTTPTYGDLNHLVCVCMSGVT 237          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 2.379e-113
Identity = 191/239 (79.92%), Postives = 211/239 (88.28%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MRE++HIQGGQCGNQIG+KFWEV+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENADE M LDNEALYDICFRTLKL+ P++GDLNHL+ A MSG+T C
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLVCAAMSGITTC 239          
The following BLAST results are available for this feature:
BLAST of CN181741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBB_STYLE2.541e-11582.01Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ... [more]
TBB_EUPCR5.662e-11581.59Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB7_GOSHI5.662e-11582.01Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_TOXGO9.657e-11580.75Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBB_EUPOC1.261e-11481.17Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]
TBB_TRYCR8.176e-11479.08Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB_EIMTE1.068e-11381.51Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB1_PHYPO1.395e-11380.33Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB4_OOMCK1.821e-11382.28Tubulin beta-4 chain OS=Oomycete-like sp. (strain ... [more]
TBB_PHYCI2.379e-11379.92Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181741 ID=CN181741; Name=CN181741; organism=Citrus sinensis; type=EST; length=771bp
GTGAAAATATCCTCTGCAAATCTCGCTAATCAAGAAACCCCAAAAGAAGA
AAATGCGTGAAATCCTTCACATTCAAGGGGGCCAATGCGGGAACCAAATC
GGATCCAAGTTCTGGGAAGTGGTTTGCGCCGAGCACGGTATAGACCCGAC
CGGAAAGTATCAAGGGGATACCGATTTGCAGCTTGAGAGGATTAATGTGT
ATTACAACGAGGCAAGTTGCGGGAGATACGTGCCTAGGGCCGTGCTCATG
GATCTTGAACCTGGGACCATGGATAGCGTCAGGTCTGGTCCGTACGGTCA
GGTTTTTAGGCCCGACAATTTTGTCTTTGGCCAGTCCGGCGCCGGAAACA
ACTGGGCGAAGGGGCATTATACTGAAGGAGCTGAGCTGATTGACTCTGTG
CTTGATGTTGTTCGTAAAGAAGCCGAGAACTGCGATTGCTTGCAGGGATT
TCAGGTGTGCCATTCTCTGGGAGGAGGGACAGGTTCCGGGATGGGAACTT
TGTTGATATCAAAGATAAGAGAGGAATACCCGGATAGAATGATGCTTACT
TTCTCAGTTTTCCCATCTCCTAAGGTCTCTGATACTGTTGTTGAGCCTTA
CAACGCTACTCTCTCTGTACATCAGCTAGTTGAAAATGCAGATGAGTGTA
TGGTTCTTGATAATGAAGCCCTTTACGACATCTGTTTCCGCACTCTCAAA
CTCAGCACTCCAAGCTTTGGTGATCTGAATCATTTGATATCTGCTACAAT
GTCTGGAGTTACCTGTTGTTT
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