CN188702

Overview
NameCN188702
Unique NameCN188702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 7.890e-44
Identity = 83/117 (70.94%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NG P+E++EP  L++K  EP+LL G+  F GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R
Sbjct:   30 GLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 7.890e-44
Identity = 83/117 (70.94%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NG P+E++EP  L++K  EP+LL G+  F GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R
Sbjct:   30 GLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 7.890e-44
Identity = 83/117 (70.94%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NG P+E++EP  L++K  EP+LL G+  F GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R
Sbjct:   30 GLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 7.890e-44
Identity = 83/117 (70.94%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NG P+E++EP  L++K  EP+LL G+  F GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R
Sbjct:   30 GLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.296e-43
Identity = 83/117 (70.94%), Postives = 100/117 (85.47%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NG P+E +EP  L++K  EP+LL G+  F GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R
Sbjct:   30 GLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.998e-43
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GL+K+NG P+E +EP++L++K  EP+LL G+  F GVD+R+RV GGGH +Q+YAIRQ+I+KALVAFYQKYVDE SKKEIKDILV+YDRTL+V D RRCEPKKF G GARAR+QKS R
Sbjct:   32 GLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.916e-43
Identity = 81/117 (69.23%), Postives = 103/117 (88.03%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            G++++NG P++LVEP +L++K  EPILL G+  F+GVD+R+ VKGGGH +Q+YAIRQ+I+KAL+AFYQKYVDE SKKEIKDILV+YDR+L+VAD RRCEPKKF G GARAR+QKS R
Sbjct:   35 GVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.114e-43
Identity = 82/117 (70.09%), Postives = 100/117 (85.47%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NG P+E +EP  L++K  EP+LL G+  F GVD+R+RVKGGGH +Q+YAIRQ+I+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R
Sbjct:   30 GLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.654e-42
Identity = 78/118 (66.10%), Postives = 102/118 (86.44%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            +GL+++NG P++ +EP++L++K  EP+LL G+  F GVD+RIRV GGGH +Q+YAIRQ+I+KALV+FYQKYVDE S+KE+KDIL +YDRTL+VAD RRCEPKKF G GARAR+QKS R
Sbjct:   31 KGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.149e-41
Identity = 81/118 (68.64%), Postives = 96/118 (81.36%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            +GLIKING PI LV+PEILRFK +EP+ L G   F G+D+R++V GGGH SQ+YAIRQ+IAK LVA++QKYVDE SK E+K I   YD+TL+VAD RR EPKKF GRGARARFQKS R
Sbjct:   25 KGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLLVADSRRMEPKKFGGRGARARFQKSYR 142          
The following BLAST results are available for this feature:
BLAST of CN188702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS16_PIG7.890e-4470.9440S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P... [more]
RS16_MOUSE7.890e-4470.9440S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN7.890e-4470.9440S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN7.890e-4470.9440S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_ICTPU2.296e-4370.9440S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_DROME2.998e-4370.0940S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_SPOFR3.916e-4369.2340S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_HETFO5.114e-4370.0940S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_AEDAE5.654e-4266.1040S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_CANAL2.149e-4168.6440S ribosomal protein S16 OS=Candida albicans GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188702 ID=CN188702; Name=CN188702; organism=Citrus sinensis; type=EST; length=490bp
ACAATACCGTTAAGAATAACAATAACCCCCCTAAATGTATGTGGCCTCAA
AAACATATTAATTAATCCTTCAATAAAACCCAAAATTAATAACAATAATA
AAAACGCAACATATACCTCTGTTTCTTCAACGGCAAGATTTCTGGAACCT
AGCCCTGGCCCCTCGTCCTCTGAACTTCTTAGGCTCACAGCGTCTATGAT
CAGCCACAATTAAAGTCCTATCGTACCTAACCAGAATGTCTTTTATCTCC
TTCTTGCTCGGTTCGTCCACGTACTTCTGATAAAACGCGACCAAGGCCTT
GGCGATGCTCTGGCGTATAGCGTACATCTGAGATGTGTGGCCTCCGCCCT
TGACGCGGATCCTCATGTCTACTCCGTTGAAACAGTGTCGTCCGAACAAT
AGGATCGGCTCGAAGGCCTTGAAACGCAGGATCTCTGGCTCCACAAGCTC
GATTGGGCAGCCGTTGATCTTGATCAAGCCGCGGGCGCAC
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