CN188702

Overview
NameCN188702
Unique NameCN188702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_THEAC (30S ribosomal protein S9P OS=Thermoplasma acidophilum GN=rps9p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 51/118 (43.22%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            +G++ ING P+EL    +LR K  EP+L+        +D+ ++V+GGG T Q  A R +IA+A+V    KY+++    E++++  +YDRTLIV D R   PKK  GRGARA+ QKS R
Sbjct:   20 KGIVTINGYPVELYPVRVLRNKIMEPLLI-AEDKAKDLDIAVKVRGGGVTGQADASRTAIARAIV----KYLNDT---ELENLFRQYDRTLIVNDVRIKLPKKAGGRGARAKKQKSYR 129          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_THESM (30S ribosomal protein S9P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps9p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 46/119 (38.66%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKK--FRGRGARARFQKSCR 480
            G +++N  P+E++EPEI RF   EP+++ G      VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT++V D RR EP K     +G RA+ QKS R
Sbjct:   32 GRVRVNYKPVEILEPEIARFTIMEPLVIAGEEILGKVDVDVKVEGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFMKYDRTMLVGDSRRTEPHKPNRSTKGPRAKRQKSYR 143          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_DESK1 (30S ribosomal protein S9P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps9p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            G + IN  P+E ++ E+ + K  EP+LL G      VD+R+ V GGG+ SQ  A+R +IA+ LV F+       +  E+K +   YDR ++  D R+ EPKK+    AR R+QKS R
Sbjct:   32 GRVWINNVPVEFIQFELAKMKILEPLLLIG-DLAKTVDIRVNVHGGGYMSQAEAVRIAIARGLVEFF-------NSDEVKSLFKEYDRHMLSGDPRQTEPKKWGRYSARRRWQKSYR 140          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_ARCFU (30S ribosomal protein S9P OS=Archaeoglobus fulgidus GN=rps9p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 46/118 (38.98%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            +G ++IN  P+E+ +PE+ R K  EP+++  +     VD+ ++  GGG  +Q  A R +IA+AL+ F          +E++   + YDRTL+V D RR  PK   GRGARAR Q S R
Sbjct:   26 KGRVRINSVPVEIHQPELARMKIMEPLII-AKELAEKVDIEVKTWGGGFMAQAEAARTAIARALLEF-------SGDEELRKAFLEYDRTLLVNDVRRKLPKIQGGRGARARRQTSYR 135          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_PICTO (30S ribosomal protein S9P OS=Picrophilus torridus GN=rps9p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 51/117 (43.59%), Postives = 69/117 (58.97%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            G   ING PIEL   EILR K  EPI + G      +D+ + V GGG+T Q  A R ++AKA++ +++   D   + EI+     YDR+++V D RR  PKK  G GARA+ QKS R
Sbjct:   25 GKFLINGYPIELYPIEILREKMLEPIRILGDRS-KEIDIDVNVHGGGNTGQADATRTAMAKAIIEYFK---DSDLEAEIR----AYDRSMLVNDVRRKMPKKPMGYGARAKRQKSYR 133          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_SULTO (30S ribosomal protein S9P OS=Sulfolobus tokodaii GN=rps9p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.988e-14
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            +G + +N  P+E++  E++R K  EP+LL G    + +D +I V+GGG   Q  A R ++A+ALV F          KE+++I   YDRT++  D R+ E +K+    AR   QK+ R
Sbjct:   27 KGRVFVNDIPLEIIPMEVVRMKIMEPLLLAGEKISSSIDAKIYVEGGGVMGQADAARMALARALVKF-------TGSKELEEIYKVYDRTMLAGDPRQTESEKWMRYSARRWRQKAYR 137          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_PYRAE (30S ribosomal protein S9P OS=Pyrobaculum aerophilum GN=rps9p PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13
Identity = 45/117 (38.46%), Postives = 69/117 (58.97%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            G ++ING P+EL   E+ R K  EP++L G      VD+ + V GGG+  Q  A+R ++A+ LVAF+Q        +E+K++  RYD  ++  D RR E KK   + AR++ QK+ R
Sbjct:   34 GRVRINGYPLELWPIEMARIKMSEPLILAGELA-KKVDIDVNVSGGGYMGQAVAVRIAMARGLVAFFQ-------SQELKELYERYDPYMLKGDPRRTEHKKPGIKHARSKRQKAYR 142          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_SULSO (30S ribosomal protein S9P OS=Sulfolobus solfataricus GN=rps9p PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 4.223e-13
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            +G + +N  PIEL+  E++R K  EP+LL G    + +D +I   GGG   Q  A R ++A+ALV F          KE++ I   YDRT++  D R+ E +K+    AR   QKS R
Sbjct:   27 KGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYGGGIMGQADAARMALARALVKF-------TGSKELEKIYRAYDRTMLAGDPRQTESEKWMRYSARRWRQKSYR 137          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS9_SULAC (30S ribosomal protein S9P OS=Sulfolobus acidocaldarius GN=rps9p PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.223e-13
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            G + +N  PIE++  E++R+K  EP++L G    + ++ RI  +GGG   Q  A R ++A+ALV F        + KE+ +I   YDRT++  D R+ E +K+    AR   QK+ R
Sbjct:   29 GKVFVNDIPIEIIPIEVVRYKIMEPLVLAGDKITSSIEARIYTQGGGIMGQADAARMALARALVKF-------TNSKELVEIYKSYDRTMLAGDPRQTESEKWMRYSARRWRQKAYR 138          
The following BLAST results are available for this feature:
BLAST of CN188702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS9_THEAC3.124e-1643.2230S ribosomal protein S9P OS=Thermoplasma acidophi... [more]
RS9_THESM6.960e-1638.6630S ribosomal protein S9P OS=Thermococcus sibiricu... [more]
RS9_DESK16.960e-1639.3230S ribosomal protein S9P OS=Desulfurococcus kamch... [more]
RS9_ARCFU2.645e-1538.9830S ribosomal protein S9P OS=Archaeoglobus fulgidu... [more]
RS9_PICTO7.695e-1543.5930S ribosomal protein S9P OS=Picrophilus torridus ... [more]
RS9_SULTO4.988e-1435.5930S ribosomal protein S9P OS=Sulfolobus tokodaii G... [more]
RS9_PYRAE1.111e-1338.4630S ribosomal protein S9P OS=Pyrobaculum aerophilu... [more]
RS9_SULSO4.223e-1337.2930S ribosomal protein S9P OS=Sulfolobus solfataric... [more]
RS9_SULAC4.223e-1335.0430S ribosomal protein S9P OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188702 ID=CN188702; Name=CN188702; organism=Citrus sinensis; type=EST; length=490bp
ACAATACCGTTAAGAATAACAATAACCCCCCTAAATGTATGTGGCCTCAA
AAACATATTAATTAATCCTTCAATAAAACCCAAAATTAATAACAATAATA
AAAACGCAACATATACCTCTGTTTCTTCAACGGCAAGATTTCTGGAACCT
AGCCCTGGCCCCTCGTCCTCTGAACTTCTTAGGCTCACAGCGTCTATGAT
CAGCCACAATTAAAGTCCTATCGTACCTAACCAGAATGTCTTTTATCTCC
TTCTTGCTCGGTTCGTCCACGTACTTCTGATAAAACGCGACCAAGGCCTT
GGCGATGCTCTGGCGTATAGCGTACATCTGAGATGTGTGGCCTCCGCCCT
TGACGCGGATCCTCATGTCTACTCCGTTGAAACAGTGTCGTCCGAACAAT
AGGATCGGCTCGAAGGCCTTGAAACGCAGGATCTCTGGCTCCACAAGCTC
GATTGGGCAGCCGTTGATCTTGATCAAGCCGCGGGCGCAC
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