CN188701

Overview
NameCN188701
Unique NameCN188701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1283 contig Csv1_Contig1283:154..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.189e-40
Identity = 88/154 (57.14%), Postives = 101/154 (65.58%), Query Frame = 2
Query:   47 MSLIPSIFGN--RSVFDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            MSLIPSIFG    +VFDPFS D+W        P  S S E S F + +VDWKET+EAHV KAD+PGL          D RVLQISGER+VEKEDKND WHRV+R  GKF+RRFRLPENAK++QVKA MENGVL                I+I+G
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.352e-39
Identity = 87/157 (55.41%), Postives = 103/157 (65.61%), Query Frame = 2
Query:   47 MSLIPSIFGNR--SVFDPFSSDVWAPL----------GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            MSLIPSIFG R  +VFDPFS DV+ P            + + +V+ F +A+VDW+ET EAHVFKADLPGL          DG +LQISGERS E E+KNDKWHRVER  GKF RRFRLPENAK++++KASMENGVL               SI I+G
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.011e-39
Identity = 83/156 (53.21%), Postives = 102/156 (65.38%), Query Frame = 2
Query:   47 MSLIPSIFGNR--SVFDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            MSL+PS FG R  +VFDPFS DVW P           + + +V+ F +A+VDW+ET EAHVFKAD+PGL          DG +LQISGERS E E+K+D WHRVER  GKF+RRFRLPENAK+++VKASMENGVL               S+ I+G
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.167e-38
Identity = 86/153 (56.21%), Postives = 98/153 (64.05%), Query Frame = 2
Query:   47 MSLIPSIFGNR---SVFDPFSSDVWAPL-----GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            MS+IPS F N    ++FDPFS DVW P       S S E S   +A+VDW+ET EAHVFKADLPGL          +  VL+ISGER VEKEDKND WHRVER  G+F RRFRLPEN K+DQVKA+MENGVL               SIQI+G
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.991e-38
Identity = 85/157 (54.14%), Postives = 103/157 (65.61%), Query Frame = 2
Query:   47 MSLIPSIFGNR--SVFDPFSSDVWAP-----LGSSS-----NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            MS+IPS FG R  +VFDPFS DVW P     L +SS      E + F +  +DWKET +AHVFKADLPGL          +G+VLQISGER+ EKE+KNDKWHRVER  GKF+RRFRLPENAK+D+VKA+M NGV+               +I I+G
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.792e-38
Identity = 82/134 (61.19%), Postives = 92/134 (68.66%), Query Frame = 2
Query:   47 MSLIPSIFGNR----SVFDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 418
            MSLIPS FGN     S+FDPFS DVW P        S S E S   +A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D WHRVER  G+F R+F+LPEN K+DQVKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.201e-37
Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKET E+HVFKADLPG+          +G VL ISG+RS EKEDKNDKWHRVER  G+F+RRFRLPENAK+DQVKA MENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.875e-37
Identity = 82/132 (62.12%), Postives = 92/132 (69.70%), Query Frame = 2
Query:   47 MSLIPSIFGNR-----SVFDPFSSDVWAP---LGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 418
            MSLIPS FGN      ++FDPFS DVW P   L   S+  S  A+A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D WHRVER  G F R+FRLPEN K+DQVKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.755e-37
Identity = 83/159 (52.20%), Postives = 102/159 (64.15%), Query Frame = 2
Query:   47 MSLIPSIFGNR--SVFDPFSSDVWAPL---------GSSSN---EVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            MS+IPS FG+R  +V +PFS D+W P          G+SS    E + FA+  +DWKET +AHVFKADLPGL          +G+VLQISGER+ EKE+KN+KWHRVE   GKF+RRFRLPENA +D+VKA MENGVL               SI I+G
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.904e-37
Identity = 78/149 (52.35%), Postives = 97/149 (65.10%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKET E+HVFKADLPG+          +G VL ISG+RS EKEDKNDKWHRVER  G+F+RRFRLPENAK+DQVKA +ENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of CN188701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
HSP15_SOYBN6.189e-4057.1417.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17C_ARATH2.352e-3955.4117.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP17_ARATH4.011e-3953.2117.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17B_ARATH1.167e-3856.2117.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_DAUCA1.991e-3854.1417.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS178_ARATH5.792e-3861.1917.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16B_ORYSJ2.201e-3753.0216.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS17A_ARATH2.875e-3762.1217.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP12_DAUCA3.755e-3752.2018.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16A_ORYSJ4.904e-3752.3516.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188701 ID=CN188701; Name=CN188701; organism=Citrus sinensis; type=EST; length=676bp
CTTTAACGCTTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGT
CTTTGATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACCCATTTTCC
TCGGACGTCTGGGCGCCCCTTGGCTCCTCCAGCAACGAGGTGTCAACATT
CGCCAGTGCTCAAGTCGATTGGAAAGAAACCCGGGAAGCTCATGTTTTCA
AGGCGGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAG
GACGGGAGAGTCCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGA
CAAGAACGACAAATGGCACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGA
GGAGGTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCA
ATGGAGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAA
GCCTGAGGTCAAATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTG
CAGCCTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATG
TGCGATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATGTAATGTGTTGT
CGACTGCTTTTTTAAGTAATAAAAATATGTTGTTTTCTTGAAGGAGAAAT
ATATTAATTATTAATTCATGTAACCG
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