CN188701

Overview
NameCN188701
Unique NameCN188701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1283 contig Csv1_Contig1283:154..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = 2
Query:   89 DPFSSDVWAP----------LGSSS--NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 418
            DPFS DVW P          L +SS   E S F S ++DWKET EAHVFKADLPGL          D RVLQISGER+VEKEDKND+WHRVER  GKF+RRFRLPENAK+DQVKA+MENGVL
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVL 122          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.151e-36
Identity = 80/160 (50.00%), Postives = 95/160 (59.38%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAPLGS--------------------SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            S+    +VFDPFS D+W P                       +S+E + FA A++DWKET EAHVFKAD+PGL          DG VLQISGERS E+E+K DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQ+TG
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.081e-36
Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = 2
Query:   47 MSLIPSIFGNR--SVFDPFSSDVWAPLGS-----SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 418
            MS+IPS F ++  ++FDPFS D W P         + E +   +A++DWKET EAHV KADLPG+          DGRVLQISGER  E+E+K+D WHRVER  GKF+RRFRLPENAK+D+VKA MENGVL
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVL 131          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.248e-36
Identity = 81/153 (52.94%), Postives = 95/153 (62.09%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAPL-------GSSS------NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            S+    +VFDPFS D+W P        GS S      ++ + FA A++DWKET EAHVFKAD+PGL          DG VLQISGER  E+E+K DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQITG
Sbjct:    2 SMIRRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 80/160 (50.00%), Postives = 98/160 (61.25%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAPL--------GSSS------------NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            S+    +VFDPFS D+W P         GSSS            +E + FA A++DWKET EAHVFKAD+PGL          DG +LQISGER+ E+E+K D+WHRVER  GKF+RRFRLP+NAK +Q+KASMENGVL               SIQI+G
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 78/149 (52.35%), Postives = 96/149 (64.43%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            S+    +VFDPF+ D W P           +S  + + FA+A+VDWKET E+HVFKADLPG+          +G VL ISG+RS EKEDKNDKWHRVER  G+F+RRFRLPENAK+DQVKASMENGVL               +I+I+G
Sbjct:    2 SLVRRSNVFDPFA-DFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 79/158 (50.00%), Postives = 97/158 (61.39%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAPL--------GSSSN----------EVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            S+    + FDPFS D+W P+        GSSS+          + + FA A++DWKET E HVFKAD+PGL          DG +LQISGERS E+E+K+DKWHRVER  GKF+RRFRLPEN K +Q+KASMENGVL               SIQI+G
Sbjct:    2 SLIRRGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 78/151 (51.66%), Postives = 96/151 (63.58%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            SI    +VFDPF+ D+WA            +   S+E + FA+A+VDWKET EAHVFK DLPG+          DG VL +SGERS EKEDKNDKWHRVER  GKFVRRFRLPE+AK+++VKA +ENGVL               +I+I+G
Sbjct:    2 SIVRRSNVFDPFA-DLWADPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 2
Query:   47 MSLIPSIF---GNRS-VFDPFSSD-VWAPL------------GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 418
            MSLIP+ +   G RS +FDPFS D +W P               ++ E + FA+A++DWKET EAHVFKADLPG+          DG VL+ISG+R+ EKE+KND WHRVER  G+F+R+FRLPENAK+DQVKA MENGVL
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPFFGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of CN188701 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.476e-33
Identity = 76/151 (50.33%), Postives = 95/151 (62.91%), Query Frame = 2
Query:   62 SIFGNRSVFDPFSSDVWAP-----------LGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWHRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXXSIQITG 481
            SI    +VFDPF+ D+WA            +    +E + FA+A++DWKET EAHVFKADLPG+          DG VL +SGER+ EKEDKNDKWHRVER  GKFVRRFRL E+AK+++VKA +ENGVL               +IQI+G
Sbjct:    2 SIVRRTNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of CN188701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
HSP11_MEDSA2.434e-3665.5718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS181_ORYSJ4.151e-3650.0018.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_HELAN7.081e-3657.2517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS174_ORYSJ9.248e-3652.9417.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17A_ORYSJ2.691e-3550.0017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ2.691e-3552.3516.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS177_ORYSJ5.994e-3550.0017.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT5.994e-3551.6616.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_CHERU1.744e-3455.3218.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS16B_WHEAT1.476e-3350.3316.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188701 ID=CN188701; Name=CN188701; organism=Citrus sinensis; type=EST; length=676bp
CTTTAACGCTTTCGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGT
CTTTGATTCCATCTATATTCGGAAACAGGAGCGTGTTCGACCCATTTTCC
TCGGACGTCTGGGCGCCCCTTGGCTCCTCCAGCAACGAGGTGTCAACATT
CGCCAGTGCTCAAGTCGATTGGAAAGAAACCCGGGAAGCTCATGTTTTCA
AGGCGGATCTTCCGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTGAG
GACGGGAGAGTCCTTCAGATCAGCGGTGAGAGGAGCGTCGAGAAGGAAGA
CAAGAACGACAAATGGCACCGTGTTGAGAGGGGCCGCGGCAAGTTCGTGA
GGAGGTTCCGGTTGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCA
ATGGAGAATGGTGTCCTCACCGTCACTGTTCCCAAAGTGGAGGAGAAGAA
GCCTGAGGTCAAATCCATTCAGATCACTGGTTGAAACTCTCCGTTAATTG
CAGCCTTTTTAATTTGGTTCTTGTTTTGTTCTGTGTGTTAATGAACGATG
TGCGATTGCTGTTAAGTGTGTCGCATACTTTTGTTCATGTAATGTGTTGT
CGACTGCTTTTTTAAGTAATAAAAATATGTTGTTTTCTTGAAGGAGAAAT
ATATTAATTATTAATTCATGTAACCG
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