CN181733

Overview
NameCN181733
Unique NameCN181733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 54/131 (41.22%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            ++L   P+   AL P+++K+TLEFH  KHH AYV+N N  +  T+L DG+ +E V+ A          FNNAAQAWNH F+W                  I  DFGS             TQFGSGWAWLV
Sbjct:    3 YELPALPFDYTALAPYITKETLEFHHDKHHAAYVNNYNNAVKDTDL-DGQPIEAVIKAIAGDASKAGLFNNAAQAWNHSFYWNSIKPNGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLV 132          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.508e-22
Identity = 57/131 (43.51%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L P PY  +AL+PH+SK+TLEFH  KHH  YV NLN  + GTE  +GK+LE++V  S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPPLPYAHDALQPHISKETLEFHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKTS--SGGI---FNNAAQVWNHTFYWNCLAPNAGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22
Identity = 56/131 (42.75%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L P PY  +AL+PH+SK+TLE+H  KHH  YV NLN  + GTE  +GK+LE++V +S   G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPPLPYAHDALQPHISKETLEYHHDKHHNTYVVNLNNLVPGTEF-EGKTLEEIVKSS--SGGI---FNNAAQVWNHTFYWNCLSPNGGGQPTGALADAINAAFGSFDKFKEEFTKTSVGTFGSGWGWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-21
Identity = 56/131 (42.75%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.227e-21
Identity = 56/131 (42.75%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L   PY  +AL PH+S +TLE+H+GKHH+ YV NLN  I GT   +GKSLE++V  S  +G +   FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRTS--EGGI---FNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFGSFAEFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 53/131 (40.46%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F+L   PY  +AL PH+S +T+E+H+GKHH+ YV NLN  I GT   +GKSLE+++ +S         FNNAAQ WNH F+W                  I   FGS               FGSGW WLV
Sbjct:    3 FELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIIRSSEG-----GVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 55/129 (42.64%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  271 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            L P PY L+AL P +SK+TLEFH+GKHH+ YV NLN  I GTE  +  SLE++V  S         FNNAAQ WNH F+W                  I+  +GS               FGSGW WLV
Sbjct:    5 LPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEF-ENLSLEEIVKKSSG-----GVFNNAAQVWNHTFYWNSLSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLV 127          
The following BLAST results are available for this feature:
BLAST of CN181733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SODF_SYNE75.508e-2241.22Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_PSEPU5.508e-2243.51Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_PSEPK9.394e-2242.75Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_SALTY1.227e-2142.75Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI1.227e-2142.75Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_SHIFL2.733e-2140.46Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_ECOLI2.733e-2140.46Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL62.733e-2140.46Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO572.733e-2140.46Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODF_BORPE7.953e-2142.64Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181733 ID=CN181733; Name=CN181733; organism=Citrus sinensis; type=EST; length=659bp
GCCCATTGCACTCACTTCGTAGTACCACAACACAAATCAAGAGTCAACCC
AGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAA
GCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCT
CCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATT
GCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCC
GAATTTCTGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCT
CTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCA
CCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGC
TTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAG
GGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGA
CTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTG
AACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTT
GAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTG
GCTTGTATA
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