CN181733

Overview
NameCN181733
Unique NameCN181733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:46..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  286 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 654
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 48/140 (34.29%), Postives = 65/140 (46.43%), Query Frame = 1
Query:  238 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            +   + S  F L   PY   + +PH + +T ++H GKHH +YV NLN  +   E    K LE ++  S +K   +  FNNA+Q WNH FFW                  I +DFGS              QFGSGW W+V
Sbjct:    5 RKANQTSYPFILPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVV 143          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 47/134 (35.07%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  256 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            S  F L   PY   + +PH +++T ++H GKHH +YV NLN  I   E    K LE+++  S    + +   NNA+Q WNH FFW                  I +DFGS              QFGSGW W+V
Sbjct:   11 SYPFILPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDREELQKKDLEEIIEWSSQNAE-VAILNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWVV 143          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 52/131 (39.69%), Postives = 64/131 (48.85%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  NALEPH+SK+TLEFH  KHH  YV+ LN  + GTE  + K+LE+++     +      +NNAAQAWNH F+W                 L    FG                FGSGW WLV
Sbjct:    3 FQLPQLPYAYNALEPHISKETLEFHHDKHHATYVNKLNGLVKGTE-QEHKTLEELI----KQKPTQAIYNNAAQAWNHAFYWKCMCGCGVKPSEQLIAKLTAA-FGGLEEFKKKFTEKAVGHFGSGWCWLV 127          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 2.027e-16
Identity = 54/131 (41.22%), Postives = 63/131 (48.09%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 654
            F+L   PY  +AL P+MS++TLE+H  KHH AYV N NK      L D  SLED+V  SY  G   P FNNA Q +NH  FW                   I+ D G               QFGSGWAWL
Sbjct:    3 FELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSD-LSLEDIVKKSY--GTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWL 130          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.703e-16
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  283 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 654
            PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE  +   L  +V  S  +G +   FNNA Q  NH+ ++                  I++ FGS             T FGSGW WL
Sbjct:    9 PYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWL 126          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 52/139 (37.41%), Postives = 64/139 (46.04%), Query Frame = 1
Query:  259 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            AK +L   PY  +ALEPH  K+T+  H  KHH  Y+ NLN  + G  EL D KS+E++V    N  ++  A      NN     NH FFW                  IE  FGS             T+FGSGWAWLV
Sbjct:    2 AKHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLV 136          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.927e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD-FFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 654
            +++   PY  NALEP +S+ T+++H+GKH + YV+NLN  + GTE  +GK++E  ++AS   G +   FNNA Q  NH  +F                   I+RDFGS               FGSGWAWL
Sbjct:    3 YEMPKLPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEY-EGKTVE-AIVASAPDGAI---FNNAGQVLNHTLYFLQFAPKPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWL 128          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 48/137 (35.04%), Postives = 59/137 (43.07%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            ++L   PY  +ALEPH+   T E H  KHH  YV NLN  + GTE  D K + D++       D LPA       NN     NH  FW                  I+  FGS             T+FGSGWAWL+
Sbjct:    3 YELPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFAD-KDINDLIAML----DALPADKQTAVRNNGGGHANHTLFWEVIAPGGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLI 134          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.521e-15
Identity = 50/136 (36.76%), Postives = 63/136 (46.32%), Query Frame = 1
Query:  259 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDV--VIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            A+F   P PY  NAL+P + + T+E H+GKHH+AYVDNLN QI      D   L  +   I+ YN        NN    +NH FFW                   I +DFGS              +FGSGWAWL+
Sbjct:   23 AEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQKQISKYNTA----VRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLI 154          
The following BLAST results are available for this feature:
BLAST of CN181733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SODF_PLAF74.825e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_RICTY6.301e-1834.29Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICPR6.301e-1835.07Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_ENTHI6.301e-1839.69Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODF_RHIME2.027e-1641.22Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_PORGI7.703e-1638.71Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM1_BACAN2.927e-1537.41Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODF_BACFR2.927e-1537.40Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODM_KLEPL6.521e-1535.04Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODM_ACIAD6.521e-1536.76Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181733 ID=CN181733; Name=CN181733; organism=Citrus sinensis; type=EST; length=659bp
GCCCATTGCACTCACTTCGTAGTACCACAACACAAATCAAGAGTCAACCC
AGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAA
GCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCT
CCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATT
GCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCC
GAATTTCTGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCT
CTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCA
CCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGC
TTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAG
GGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGA
CTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTG
AACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTT
GAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTG
GCTTGTATA
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