CN181733

Overview
NameCN181733
Unique NameCN181733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 41/133 (30.83%), Postives = 59/133 (44.36%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            ++L   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G      K +E++V  + S  +       N+     NH  FW                  IE +FG+              +FGSGWAWLV
Sbjct:    3 YELPKLPYTYDALEPNFDKETMELHYTKHHNTYVTKLNEAVSGHPELAEKPVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLV 135
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAAW (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MW2) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAAS (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MSSA476) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAAR (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain MRSA252) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAAN (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain N315) GN=sodM PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAAM (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodM PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAAC (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain COL) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAA8 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodM PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
[Close]
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM2_STAA3 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain USA300) GN=sodM PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 43/133 (32.33%), Postives = 60/133 (45.11%), Query Frame = 1 
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  +ALEP++ + T+EFH  KHH  YV  LN  + GTEL + +SL D++  +    +   +   NN    +NH  FW                  I+  +G+             T FGSGW WLV
Sbjct:    3 FKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTEL-EHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD--IKAQWGTLDEFKNEFANKATTLFGSGWTWLV 132
The following BLAST results are available for this feature:
BLAST of CN181733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SODM_LISIN1.151e-1130.83Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM2_STAAW1.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAS1.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAR1.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAN1.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAM1.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAC1.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAAB1.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAA81.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM2_STAA31.151e-1132.33Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181733 ID=CN181733; Name=CN181733; organism=Citrus sinensis; type=EST; length=659bp
GCCCATTGCACTCACTTCGTAGTACCACAACACAAATCAAGAGTCAACCC
AGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAA
GCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCT
CCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATT
GCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCC
GAATTTCTGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCT
CTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCA
CCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGC
TTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAG
GGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGA
CTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTG
AACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTT
GAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTG
GCTTGTATA
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