CN181733

Overview
NameCN181733
Unique NameCN181733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:46..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 48/135 (35.56%), Postives = 62/135 (45.93%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQI-VGTELGDGKSLEDVVIASYN--KGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            + L   PY  +ALEP++  +T+  H  KHH  YV NLN  I    ELG+ KS+E+ +I+  N    D+  A  NN     NH FFW                  I+  FGS              +FGSGWAWLV
Sbjct:    3 YTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEKHPELGE-KSVEN-LISDMNAIPEDIRTAVRNNGGGHANHTFFWEIMAPNAGGQPTGAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLV 135          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 42/133 (31.58%), Postives = 57/133 (42.86%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            ++L   PY  +ALEP+  K+T+E H+ KHH  YV  LN+ + G  EL      E V        ++  A  N+     NH  FW                  IE +FG+              +FGSGWAWLV
Sbjct:    3 YELPKLPYTYDALEPNFDKETMEIHYTKHHNIYVTKLNEAVSGHAELASKPGEELVANLDSVPEEIRGAVRNHGGGHANHTLFWSSLSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLV 135          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 46/138 (33.33%), Postives = 56/138 (40.58%), Query Frame = 1
Query:  271 LKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKG---DLLP------AFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 654
            L P PY   +LEPH+   T+  H  KHH+ YV+NLN       L     L+D+ +   NK    D LP        NN    +NH FFW                   IE  FGS              +FGSGWAWL
Sbjct:    5 LPPLPYDYGSLEPHVDATTMNIHHTKHHQTYVNNLN-----AALDKFPELKDLGLVDLNKAVGTDKLPKDVATVIRNNGGGHYNHSFFWKVMTNPSNTNGPNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWL 137          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 45/126 (35.71%), Postives = 54/126 (42.86%), Query Frame = 1
Query:  286 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            Y  +ALEPH    T+E H  KHH+AYV+N N  +    EL  G   + +   +    D L A  NN     NH  FW                  I RDFGS             T+FGSGWAWLV
Sbjct:   10 YAYDALEPHFDAMTMEIHHSKHHQAYVNNANAALENLPELAQGCPGQLLTKLAEVPADKLTAIRNNVGGHLNHSLFW--KSLKKGTTLQGALKDAIVRDFGSVEAFQAEFEKAAATRFGSGWAWLV 133          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 44/136 (32.35%), Postives = 59/136 (43.38%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++  +++  +       NN     NH  FW                 +   I ++FGS              +FGSGWAWLV
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLV 138          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 44/136 (32.35%), Postives = 59/136 (43.38%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L   PY  NALEP   + T+  H GKHH+ YV+NLN  I      D  SLE+++  +++  +       NN     NH  FW                 +   I ++FGS              +FGSGWAWLV
Sbjct:    3 FTLPELPYAPNALEPFFDEATMRLHHGKHHQTYVNNLNAAIEKHNELDDLSLEELLTDLSAIPEDIRTAVRNNGGGHLNHSQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLV 138          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 42/133 (31.58%), Postives = 53/133 (39.85%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV 137          
BLAST of CN181733 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 42/133 (31.58%), Postives = 53/133 (39.85%), Query Frame = 1
Query:  265 FDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 657
            F L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++  +A+  +       NN     NH  FW                  I+  FG               +FGSGWAWLV
Sbjct:    5 FKLPDLGYPYEALEPHIDAKTMEIHHQKHHGAYVTNLNAALEKYPYLHGVEVEVLLRHLAALPQDIQTAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFQALKEKLTQAAMGRFGSGWAWLV 137          
The following BLAST results are available for this feature:
BLAST of CN181733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SODM_ENTFA2.564e-1135.56Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_LISIV3.349e-1131.58Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_CHLRE4.374e-1133.33Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_PASMU5.713e-1135.71Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODM_LACLM5.713e-1132.35Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA5.713e-1132.35Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_THET87.461e-1131.58Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET27.461e-1131.58Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181733 ID=CN181733; Name=CN181733; organism=Citrus sinensis; type=EST; length=659bp
GCCCATTGCACTCACTTCGTAGTACCACAACACAAATCAAGAGTCAACCC
AGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATAACCAAA
GCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCATCTGCT
CCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTACGCGATT
GCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTGGCC
GAATTTCTGCGAAATTTGATTTGAAGCCTCCACCTTATCCACTGAATGCT
CTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAAGCA
CCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTGAGC
TTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAACAAG
GGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCATGA
CTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGTCTGGTG
AACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTTCTT
GAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGCCTG
GCTTGTATA
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