CN188700

Overview
NameCN188700
Unique NameCN188700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.178e-36
Identity = 80/149 (53.69%), Postives = 98/149 (65.77%), Query Frame = -1
Query:  256 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKET E+HVFKADLPG+         E+G VL ISG+RS EKEDKNDKW RVER  G+F+RRFRLPENAK+DQVKA MENGVL              K+I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.422e-36
Identity = 84/149 (56.38%), Postives = 97/149 (65.10%), Query Frame = -1
Query:  256 SIFGN--RSVFDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            SIFG    +VFDPFS D+W        P  S S E S F + +VDWKET+EAHV KAD+PGL         ED RVLQISGER+VEKEDKND W RV+R  GKF+RRFRLPENAK++QVKA MENGVL              K I+I+G
Sbjct:    6 SIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.081e-36
Identity = 79/149 (53.02%), Postives = 98/149 (65.77%), Query Frame = -1
Query:  256 SIFGNRSVFDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            S+    +VFDPFS D+W P  S         S N+ + FA+A++DWKET E+HVFKADLPG+         E+G VL ISG+RS EKEDKNDKW RVER  G+F+RRFRLPENAK+DQVKA +ENGVL              K+I+I+G
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.060e-35
Identity = 83/152 (54.61%), Postives = 99/152 (65.13%), Query Frame = -1
Query:  256 SIFGNR--SVFDPFSSDVWAPL----------GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            SIFG R  +VFDPFS DV+ P            + + +V+ F +A+VDW+ET EAHVFKADLPGL         EDG +LQISGERS E E+KNDKW RVER  GKF RRFRLPENAK++++KASMENGVL              KSI I+G
Sbjct:    6 SIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.691e-35
Identity = 80/151 (52.98%), Postives = 98/151 (64.90%), Query Frame = -1
Query:  256 SIFGNR--SVFDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            S FG R  +VFDPFS DVW P           + + +V+ F +A+VDW+ET EAHVFKAD+PGL         EDG +LQISGERS E E+K+D W RVER  GKF+RRFRLPENAK+++VKASMENGVL              KS+ I+G
Sbjct:    6 SFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.514e-35
Identity = 80/122 (65.57%), Postives = 88/122 (72.13%), Query Frame = -1
Query:  319 DPFSSDVWAP----------LGSSS--NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVL 648
            DPFS DVW P          L +SS   E S F S ++DWKET EAHVFKADLPGL         ED RVLQISGER+VEKEDKND+W RVER  GKF+RRFRLPENAK+DQVKA+MENGVL
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVL 122          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 81/160 (50.62%), Postives = 96/160 (60.00%), Query Frame = -1
Query:  256 SIFGNRSVFDPFSSDVWAPLGS--------------------SSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            S+    +VFDPFS D+W P                       +S+E + FA A++DWKET EAHVFKAD+PGL         EDG VLQISGERS E+E+K DKW RVER  GKF+RRFRLPEN K +Q+KASMENGVL              KSIQ+TG
Sbjct:    2 SLIRRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.994e-35
Identity = 83/148 (56.08%), Postives = 94/148 (63.51%), Query Frame = -1
Query:  256 SIFGNR---SVFDPFSSDVWAPL-----GSSSNEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            S F N    ++FDPFS DVW P       S S E S   +A+VDW+ET EAHVFKADLPGL         E+  VL+ISGER VEKEDKND W RVER  G+F RRFRLPEN K+DQVKA+MENGVL              KSIQI+G
Sbjct:    6 SFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.022e-34
Identity = 82/152 (53.95%), Postives = 99/152 (65.13%), Query Frame = -1
Query:  256 SIFGNR--SVFDPFSSDVWAP-----LGSSS-----NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            S FG R  +VFDPFS DVW P     L +SS      E + F +  +DWKET +AHVFKADLPGL         E+G+VLQISGER+ EKE+KNDKW RVER  GKF+RRFRLPENAK+D+VKA+M NGV+              K+I I+G
Sbjct:    6 SFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CN188700 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.335e-34
Identity = 82/153 (53.59%), Postives = 96/153 (62.75%), Query Frame = -1
Query:  256 SIFGNRSVFDPFSSDVWAPL-------GSSS------NEVSTFASAQVDWKETREAHVFKADLPGLXXXXXXXXXEDGRVLQISGERSVEKEDKNDKWPRVERGRGKFVRRFRLPENAKIDQVKASMENGVLXXXXXXXXXXXXXXKSIQITG 675
            S+    +VFDPFS D+W P        GS S      ++ + FA A++DWKET EAHVFKAD+PGL         EDG VLQISGER  E+E+K DKW RVER  GKF+RRFRLPEN K +Q+KASMENGVL              KSIQITG
Sbjct:    2 SMIRRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
The following BLAST results are available for this feature:
BLAST of CN188700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
HS16B_ORYSJ3.178e-3653.6916.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP15_SOYBN5.422e-3656.3817.6 kDa class I heat shock protein OS=Glycine max... [more]
HS16A_ORYSJ7.081e-3653.0216.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS17C_ARATH2.060e-3554.6117.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP17_ARATH2.691e-3552.9817.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_MEDSA3.514e-3565.5718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS181_ORYSJ5.994e-3550.6318.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17B_ARATH5.994e-3556.0817.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_DAUCA1.022e-3453.9517.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS174_ORYSJ1.335e-3453.5917.4 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188700 ID=CN188700; Name=CN188700; organism=Citrus sinensis; type=EST; length=675bp
TGAGAGCTTGCCACAAGCACTATCCCTTAAGGTGGACAACCAAAATATTG
GCTACGTCCCCGGTCCCATGAATTAATAATTAATATATTTCTCCTTCAAG
AAAACAACATATTTTTATTACTTAAAAAAGCAGTCGACAACACATTACAT
GAACAAAAGTATGCGACACACTTAACAGCAATCGCACATCGTTCATTAAC
ACACAGAACAAAACAAGAACCAAATTAAAAAGGCTGCAATTAACGGAGAG
TTTCAACCAGTGATCTGAATGGATTTGACCTCAGGCTTCTTCTCCTCCAC
TTTGGGAACAGTGACGGTGAGGACACCATTCTCCATTGATGCCTTAACTT
GATCGATCTTGGCATTCTCAGGCAACCGGAACCTCCTCACGAACTTGCCG
CGGCCCCTCTCAACACGGGGCCATTTGTCGTTCTTGTCTTCCTTCTCGAC
GCTCCTCTCACCGCTGATCTGAAGGACTCTCCCGTCCTCAACTTCAACCT
TCACTTCCTCTTTCTTGAGCCCCGGAAGATCCGCCTTGAAAACATGAGCT
TCCCGGGTTTCTTTCCAATCGACTTGAGCACTGGCGAATGTTGACACCTC
GTTGCTGGAGGAGCCAAGGGGCGCCCAGACGTCCGAGGAAAATGGGTCGA
ACACGCTCCTGTTTCCGAATATAGA
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