CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = -2
Query:  213 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 488
            QFGSGWAWLVY                   D  L ++KT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  134 QFGSGWAWLVYH------------------DNRLQIIKTANAGTPIANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.531e-17
Identity = 44/96 (45.83%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    D  L +  TPN   PL+   +P+L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V+KR   AK
Sbjct:  126 RFGSGWAWLVVN------------------DGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAKRYNEAK 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDY------SPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV K                  D  L VV T N  NPL+ +       +P+L +DVWEHAYYL++QNRRPDY++ F + +V+W+ VSKR  +AK
Sbjct:  128 TRFGSGWAWLVVK------------------DGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWN-VVNWDEVSKRYAAAK 211          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  231 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 491
            TQFGSGWAWL+                  +   +L V KTPNA NPL      LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:  123 TQFGSGWAWLI------------------DDGGTLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 43/95 (45.26%), Postives = 56/95 (58.95%), Query Frame = -2
Query:  204 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 488
            QFGSGWAWLV                  +KD  L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+W  V +  E+A
Sbjct:  123 QFGSGWAWLVV-----------------DKDGKLEIVSTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIDAFWN-VVNWNKVDELYEAA 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    + +L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  123 RFGSGWAWLVVN------------------NGNLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 43/96 (44.79%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  198 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 488
            +FGSGWAWLV                    +  L +  TPN  +P++   +P+L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:  126 RFGSGWAWLVVN------------------NGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-IVNWDEVAKRYSEAKA 203          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    + +L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   +AK
Sbjct:  123 RFGSGWAWLVVN------------------NGNLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNAAK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_BACST (Superoxide dismutase [Mn] OS=Bacillus stearothermophilus GN=sodA PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 41/97 (42.27%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  198 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 488
            +FGSGWAWLV                    +  L +  TPN  +P++   +P+L +DVWEHAYYL +QNRRP+YI+ F + +V+W+ V+KR   AKA
Sbjct:  126 RFGSGWAWLVVN------------------NGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPEYIAAFWN-VVNWDEVAKRYSEAKA 203          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODF_RICFE5.766e-1742.39Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODM_BACHD7.531e-1745.83Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]
SODM_DEIRA1.285e-1645.63Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODF_ANASP1.285e-1647.13Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODM_STACA1.678e-1645.26Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM_STAS18.326e-1644.79Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_STAEP1.087e-1544.79Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_BACCA1.087e-1542.27Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_STAXY1.420e-1543.75Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODM_BACST1.420e-1542.27Superoxide dismutase [Mn] OS=Bacillus stearothermo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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