CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_THET8 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=sodA PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = -2
Query:  204 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 488
            +FGSGWAWLV                  +    L V+ TPN  NP++  ++P++ IDVWEHAYYL +QNRR DY+    + +++W+   +  + A
Sbjct:  128 RFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWDVAEEFFKKA 204          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_THET2 (Superoxide dismutase [Mn] OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=sodA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = -2
Query:  204 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 488
            +FGSGWAWLV                  +    L V+ TPN  NP++  ++P++ IDVWEHAYYL +QNRR DY+    + +++W+   +  + A
Sbjct:  128 RFGSGWAWLV-----------------KDPFGKLHVLSTPNQDNPVMEGFTPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWDVAEEFFKKA 204          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.244e-11
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = -2
Query:  201 GSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPL-VWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 482
            GSGW WL Y                 +K    LV++T    +PL V  Y PLL IDVWEHAYYLD++N R DY+     ++V+W++V++R  +AK
Sbjct:  149 GSGWGWLGY-----------------DKANDRLVIQTQQNQDPLSVSGYVPLLGIDVWEHAYYLDYKNVRADYVKNIW-QIVNWKNVAERYNTAK 225          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_PHOLE (Superoxide dismutase [Fe] OS=Photobacterium leiognathi GN=sodB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGS W WLV                    + SL +V T NA  P+  +  +PLLT+D+WEHAYY+D++N RP Y+  F   LV+W+ VSK L
Sbjct:  118 FGSSWTWLV-----------------KNANGSLAIVNTSNAGCPITEEGVTPLLTVDLWEHAYYIDYRNLRPSYMDGFW-ALVNWDFVSKNL 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 37/92 (40.22%), Postives = 47/92 (51.09%), Query Frame = -2
Query:  216 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 491
            T FGSGW WL                  S+ +  L + K PNA NP+    +PLL  DVWEHAYYL +QNRR D++      +V W+ V  R
Sbjct:  117 TLFGSGWVWLA-----------------SDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYLTYQNRRADHLKDLW-SIVDWDIVESR 190          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 37/98 (37.76%), Postives = 58/98 (59.18%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS--PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                 S++   L +  T N  NPL+ + +  P+L  DVWEHAYYL +QNRR +Y++ + + +V+W++V++R   A+
Sbjct:  167 RFGSGWAWLV-----------------SDRQGKLSITSTANQDNPLMSNPNAYPILGNDVWEHAYYLKYQNRRAEYLTNWWN-VVNWQAVNQRYAQAQ 246          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_ENTHI (Superoxide dismutase [Fe] OS=Entamoeba histolytica GN=SODB PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.620e-11
Identity = 36/91 (39.56%), Postives = 50/91 (54.95%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGW WLV                  E D  L ++ T +AVNP+     PLLT DVWEHAYY+D +N R  Y+  + + +V+W+ V ++L
Sbjct:  119 FGSGWCWLV------------------EHDGKLEIIDTHDAVNPMTNGMKPLLTCDVWEHAYYIDTRNNRAAYLEHWWN-VVNWKFVEEQL 190          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = -2
Query:  231 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 488
            +FGSGWAWLV                  +    L V+ T N  NP++  ++P++ IDVWEHAYYL +QNRR DY+    + +++W+
Sbjct:  128 RFGSGWAWLV-----------------KDPFGKLHVISTANQDNPVMGGFAPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWD 195          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM3_PLEBO (Superoxide dismutase [Mn] 3 (Fragment) OS=Plectonema boryanum GN=sodA3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 34/95 (35.79%), Postives = 52/95 (54.74%), Query Frame = -2
Query:  204 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 488
            +FGSGW WLV                       L +V T N  NP++    P++  DVWEHAYYL +QNRR DY++ + + +V+W  +++R ++A
Sbjct:  156 RFGSGWVWLV-----------------RNAQGQLQIVSTANQDNPIMEGNYPIMGNDVWEHAYYLRYQNRRADYLNNWWN-VVNWNEINRRFQAA 232          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_HELPY (Superoxide dismutase [Fe] OS=Helicobacter pylori GN=sodB PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.065e-11
Identity = 44/123 (35.77%), Postives = 58/123 (47.15%), Query Frame = -2
Query:  201 D*LKGIL----GSXXXXXXXXXXXXATQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 557
            D LKG L    GS             T FGSGW W  Y              L ++K   + +++T NA  P+     PLL +DVWEHAYY+D +N RP Y+  F    ++W  VS+  E AK
Sbjct:   89 DELKGALEKDFGSLEKFKEDFIKSATTLFGSGWNWAAYN-------------LDTQK---IEIIQTSNAQTPVTDKKVPLLVVDVWEHAYYIDHKNARPVYLEKFYGH-INWHFVSQCYEWAK 194          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODM_THET89.527e-1236.84Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_THET29.527e-1236.84Superoxide dismutase [Mn] OS=Thermus thermophilus ... [more]
SODM_DICDI1.244e-1141.05Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODF_PHOLE1.625e-1141.30Superoxide dismutase [Fe] OS=Photobacterium leiogn... [more]
SODF_PORGI2.772e-1140.22Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM1_PLEBO3.620e-1137.76Superoxide dismutase [Mn] 1 OS=Plectonema boryanum... [more]
SODF_ENTHI3.620e-1139.56Superoxide dismutase [Fe] OS=Entamoeba histolytica... [more]
SODM_THEAQ4.728e-1138.37Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM3_PLEBO4.728e-1135.79Superoxide dismutase [Mn] 3 (Fragment) OS=Plectone... [more]
SODF_HELPY8.065e-1135.77Superoxide dismutase [Fe] OS=Helicobacter pylori G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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