CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV                    +  L V  TPN  +PL    +P++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:  141 TRFGSGWAWLVVN------------------NGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 218          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.420e-15
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV                    +  L V  TPN  +PL    +P++ +DVWEHAYYL++QNRRPDYI  F + +V W +  KR + AK
Sbjct:  126 TRFGSGWAWLVVN------------------NGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWN-VVDWNAAEKRYQEAK 203          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_SALTY (Superoxide dismutase [Fe] OS=Salmonella typhimurium GN=sodB PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:  119 FGSGWTWLV-----------------KSADGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_SALTI (Superoxide dismutase [Fe] OS=Salmonella typhi GN=sodB PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.855e-15
Identity = 42/91 (46.15%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP+Y+  F   LV+WE V+K L
Sbjct:  119 FGSGWTWLV-----------------KSADGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPNYLEHFW-ALVNWEFVAKNL 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_SHIFL (Superoxide dismutase [Fe] OS=Shigella flexneri GN=sodB PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  119 FGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 37/92 (40.22%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  213 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 488
            QFGSGW W+VY                   D  L ++KT NA  P+V    P+L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:  134 QFGSGWTWVVYH------------------DNKLQIIKTSNAGTPIVNFMKPILACDVWEHAYYIDYRNKRSDYIDIFIRHMINWKFVEDNL 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_ECOLI (Superoxide dismutase [Fe] OS=Escherichia coli (strain K12) GN=sodB PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  119 FGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_ECOL6 (Superoxide dismutase [Fe] OS=Escherichia coli O6 GN=sodB PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  119 FGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_ECO57 (Superoxide dismutase [Fe] OS=Escherichia coli O157:H7 GN=sodB PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 42/91 (46.15%), Postives = 51/91 (56.04%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGW WLV                    D  L +V T NA  PL  D +PLLT+DVWEHAYY+D++N RP Y+  F   LV+WE V+K L
Sbjct:  119 FGSGWTWLV-----------------KNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFW-ALVNWEFVAKNL 191          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STAHJ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus haemolyticus (strain JCSC1435) GN=sodA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.164e-15
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYIS F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYISAFWN-VVNWEKVDELYNATK 199          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODM1_BACCR1.420e-1543.30Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM1_BACAN1.420e-1543.30Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODF_SALTY1.855e-1546.15Superoxide dismutase [Fe] OS=Salmonella typhimuriu... [more]
SODF_SALTI1.855e-1546.15Superoxide dismutase [Fe] OS=Salmonella typhi GN=s... [more]
SODF_SHIFL2.423e-1546.15Superoxide dismutase [Fe] OS=Shigella flexneri GN=... [more]
SODF_RICPR2.423e-1540.22Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_ECOLI2.423e-1546.15Superoxide dismutase [Fe] OS=Escherichia coli (str... [more]
SODF_ECOL62.423e-1546.15Superoxide dismutase [Fe] OS=Escherichia coli O6 G... [more]
SODF_ECO572.423e-1546.15Superoxide dismutase [Fe] OS=Escherichia coli O157... [more]
SODM_STAHJ3.164e-1543.75Superoxide dismutase [Mn/Fe] OS=Staphylococcus hae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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