CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAA3 (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain USA300) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = -2
Query:  210 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 491
            T FGSGWAWLV                  ++  +L ++ T NA  P+    + LLT DVWEHAYY+D++NRRPDYI  F   LV+W+  S  L+
Sbjct:  117 TTFGSGWAWLV-----------------QDQSGALKIINTSNAGTPMTEGLNALLTCDVWEHAYYIDYRNRRPDYIEAFW-SLVNWDFASSNLK 192          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V T N  +PL    +P+L +DVWEHAYYL FQNRRP+YI  F + +V+W+  +KR ++AK
Sbjct:  126 RFGSGWAWLVVN------------------NGKLEIVSTANQDSPLSDGKTPVLGLDVWEHAYYLKFQNRRPEYIDTFWN-VVNWDEANKRFDAAK 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM2_STAAB (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodM PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T FGSGW WLV                    +  L +V TPN  NPL    +P+L  DVWEHAYYL +QN+RPDY++ F + +V+W+ V +  ++AK
Sbjct:  122 TLFGSGWTWLVVN------------------NGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWN-IVNWKKVDELYQAAK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            ++FGSGWAWL                     DK ++V  T N  +PL    +P+L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R  +A A
Sbjct:  124 SRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            ++FGSGWAWL                     DK ++V  T N  +PL    +P+L +DVWEHAYYL +QNRRPDYI  F + +V+W+ V +R  +A A
Sbjct:  124 SRFGSGWAWLSVTP-----------------DKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYLKYQNRRPDYIGAFYN-VVNWDEVERRYHAAIA 203          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 44/103 (42.72%), Postives = 56/103 (54.37%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV K                  D  L VV T N  +PL+ +        P++ +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R   AK
Sbjct:  123 TRFGSGWAWLVLKD-----------------DGKLAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWN-VVNWDEAAARFAQAK 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 46/104 (44.23%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVW------DYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            T+FGSGWAWLV                    +  L VV T N  NPL+       +  PLL +DVWEHAYYL FQNRRPDYI  F + +V+W+ V++R E   A
Sbjct:  124 TRFGSGWAWLVLTA-----------------EGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDFVAERFEQKTA 209          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODM1_STAAB9.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA89.206e-1542.71Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]
SODM1_STAA39.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODF_LEGPH1.202e-1442.55Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODM_LISIN1.570e-1442.71Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]
SODM2_STAAB1.570e-1441.24Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODM_XANCP2.051e-1441.84Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC82.051e-1441.84Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_YEREN2.678e-1442.72Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]
SODM_HAEIN2.678e-1444.23Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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