CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  219 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 485
            FGSGWAWLV                    +  L V+  PN  +PL+  Y P+L IDVWEHAYYL +QNRR +Y+  F+ K ++WE VSK
Sbjct:  126 FGSGWAWLVLCP-----------------ESGLKVISMPNQDSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFL-KALNWEEVSK 196          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V T N  +PL    +P+L +DVWEHAYYL FQNRRP+YI  F + +++W+  +KR ++AK
Sbjct:  126 RFGSGWAWLVVN------------------NGKLEIVSTANQDSPLSEGKTPVLGLDVWEHAYYLKFQNRRPEYIDTFWN-VINWDERNKRFDAAK 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_HAEDU (Superoxide dismutase [Mn] OS=Haemophilus ducreyi GN=sodA PE=3 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVW------DYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            T+FGSGWAWLV +                  +  L VV T N  +P++          P+ T+DVWEHAYYL +QNRRPDYI  F + +V+W+  S+R E  +A
Sbjct:  123 TRFGSGWAWLVLE------------------EGKLAVVSTANQDSPIMGKDVAGVSGYPIFTLDVWEHAYYLHYQNRRPDYIKAFWN-VVNWDEASRRFEEKQA 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.793e-14
Identity = 39/91 (42.86%), Postives = 50/91 (54.95%), Query Frame = -2
Query:  213 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 485
            FGSGWAWL                   +KD  L + K PN  NP+     PLL  DVWEHAYYLD+QNRR D+++   + ++ W+ V KRL
Sbjct:  121 FGSGWAWLSV-----------------DKDGKLHITKEPNGSNPVRAGLKPLLGFDVWEHAYYLDYQNRRADHVNKLWE-IIDWDVVEKRL 193          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  198 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 488
            +FGSGWAWL  K                  D SL +  TPN  NPL+          PLL +DVWEHAYYL +QNRRP+YI+ + + +V+WE V++  ++A+A
Sbjct:  129 RFGSGWAWLSVKP-----------------DGSLSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWN-VVNWEQVAENYKAAQA 213          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = -2
Query:  204 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 488
            +FGSGW WLV                   +   L ++ TPN  +PL+  ++P++  DVWEHAYYL +QNRRP+Y++ + + +++WE +++R ++A
Sbjct:  126 RFGSGWVWLV-----------------RSQQGDLQILSTPNQDSPLIEGHTPIMGNDVWEHAYYLKYQNRRPEYLNAWWN-VLNWEEINRRFDAA 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:  123 TRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:  123 TRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_PASMU (Superoxide dismutase [Mn] OS=Pasteurella multocida GN=sodA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = -2
Query:  210 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVW------DYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 491
            T+FGSGWAWLV                  +++  L VV T N  +P++       +  PLL +DVWEHAYYL FQNRRPDYI  F   +V+W+ V++R E
Sbjct:  123 TRFGSGWAWLVL-----------------QENGKLAVVSTANQDSPVMGKAIAGCEGYPLLGLDVWEHAYYLKFQNRRPDYIKEFW-HVVNWDFVAERFE 204          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_PSEAE (Superoxide dismutase [Fe] OS=Pseudomonas aeruginosa GN=sodB PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 40/89 (44.94%), Postives = 50/89 (56.18%), Query Frame = -2
Query:  219 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 485
            FGSGW WLV K                  D SL +  T  A NPL    +PLLT DVWEHAYY+D++N RP Y+  F + LV+W+ V+K
Sbjct:  119 FGSGWGWLVKKA-----------------DGSLALASTIGAGNPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWDFVAK 189          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODM_BORBU2.678e-1444.94Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODM_LISIV3.498e-1441.67Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_HAEDU5.967e-1440.38Superoxide dismutase [Mn] OS=Haemophilus ducreyi G... [more]
SODF_BACFR7.793e-1442.86Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODM_CHLRE1.018e-1341.75Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM2_PLEBO1.018e-1335.79Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODM_SALTY2.267e-1343.69Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SALTI2.267e-1343.69Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_PASMU2.267e-1343.00Superoxide dismutase [Mn] OS=Pasteurella multocida... [more]
SODF_PSEAE2.267e-1344.94Superoxide dismutase [Fe] OS=Pseudomonas aeruginos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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