CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            T+FGSGWAWL                       SLLV  + N  +PL+   +P+L +DVWEHAYYL +QNRRP+YI  F + ++ W  V++R   A A
Sbjct:  124 TRFGSGWAWLSVTPQG-----------------SLLVESSGNQDSPLMNGNTPILGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWREVARRYAQALA 203          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                  ++   L VV T N  NP+    +P+L +DVWEHAYYL + N RPDYI  F + LV+W+ V++    AK
Sbjct:  129 RFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNELYAKAK 206          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                  ++   L VV T N  NP+    +P+L +DVWEHAYYL + N RPDYI  F + LV+W+ V++    AK
Sbjct:  129 RFGSGWAWLVV-----------------DEAGKLKVVSTANQDNPISEGLTPVLGLDVWEHAYYLKYHNVRPDYIEAFFN-LVNWDKVNELYAKAK 206          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_CAMJJ (Superoxide dismutase [Fe] OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=sodB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = -2
Query:  204 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 485
            FGSGW WLVY                + K++ L  V T NA  P+  D  PLL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:  125 FGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_CAMJE (Superoxide dismutase [Fe] OS=Campylobacter jejuni GN=sodB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = -2
Query:  204 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 485
            FGSGW WLVY                + K++ L  V T NA  P+  D  PLL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:  125 FGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_CAMCO (Superoxide dismutase [Fe] OS=Campylobacter coli GN=sodB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 40/94 (42.55%), Postives = 51/94 (54.26%), Query Frame = -2
Query:  204 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 485
            FGSGW WLVY                + K++ L  V T NA  P+  D  PLL +DVWEHAYY+D +N RP Y+  F    ++WE V+K  E A
Sbjct:  125 FGSGWFWLVY----------------NTKNQKLEFVGTSNAATPITEDKVPLLVVDVWEHAYYVDHRNARPAYLEKFYAH-INWEFVAKAYEWA 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.051e-13
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +  TPN  +PL+   +P+L +DVWEHAYYL ++N RPDYI  F + +V+W+ V++   +AK
Sbjct:  126 RFGSGWAWLVVN------------------NGKLEITSTPNQDSPLMDGQTPVLGLDVWEHAYYLKYKNVRPDYIEAFWN-VVNWDKVNELFAAAK 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +V+W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IVNWKKVSELYQAAK 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            ++FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:  123 SRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR-LESAK 491
            T+FGSGWAWL                      K+L+V  + N  +PL++  +P+  +DVWEHAYYL +QNRRP+YI  F + ++ W  V +R LE+ K
Sbjct:  124 TRFGSGWAWLSVTP-----------------QKTLVVESSGNQDSPLMFGNTPIFGLDVWEHAYYLKYQNRRPEYIGAFYN-VIDWAEVERRYLEALK 203          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODM_PSEAE3.868e-1340.82Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]
SODM_LACLM3.868e-1341.67Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA3.868e-1341.67Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODF_CAMJJ3.868e-1342.55Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMJE3.868e-1342.55Superoxide dismutase [Fe] OS=Campylobacter jejuni ... [more]
SODF_CAMCO3.868e-1342.55Superoxide dismutase [Fe] OS=Campylobacter coli GN... [more]
SODM_ENTFA5.051e-1339.58Superoxide dismutase [Fe] OS=Enterococcus faecalis... [more]
SODM_STRP16.597e-1338.54Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_SHIFL6.597e-1342.72Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_PSEPU6.597e-1339.80Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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