CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            T+ GSGWAWLV +                  +  L VV T N  NPL+          P+L +DVWEHAYYL++QNRRPD+I  F + +V+W+  ++R E   A
Sbjct:  123 TRVGSGWAWLVLE------------------EGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYYLNYQNRRPDFIKAFWN-VVNWDEAARRFEEKVA 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 44/103 (42.72%), Postives = 57/103 (55.34%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            ++FGSGWAWLV K                  DK L VV T N  +PL+ +        P+L +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:  123 SRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.597e-13
Identity = 45/100 (45.00%), Postives = 55/100 (55.00%), Query Frame = -2
Query:  204 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS-----PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 488
            +FGSGWAWL+                P+ K   L V  TPN  NPL+ D S     PLL +DVWEHAYYL +QNRR DYI  F   +V+W  V++R   A
Sbjct:  145 RFGSGWAWLIVT--------------PNGK---LAVTSTPNQDNPLM-DLSETKGTPLLGLDVWEHAYYLKYQNRRADYIKAFW-SVVNWNKVNERYNEA 225          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 8.616e-13
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+  ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSELYQAAK 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.125e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYS------PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            ++FGSGWAWLV K                  DK L VV T N  +PL+ +        P++ +DVWEHAYYL FQNRRPDYI  F + +V+W+  + R  + K
Sbjct:  123 SRFGSGWAWLVLKG-----------------DK-LAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWN-VVNWDEAAARFAAKK 206          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                   K+  L +  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W+ VS   ++AK
Sbjct:  124 RFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSALYQAAK 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  219 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 491
            T+FGSGWAWLV                  +K+  L V  T N   P+     P+L +DVWEHAYYL+++N RP+YI  F + +++W +V++
Sbjct:  123 TRFGSGWAWLVV-----------------DKEGKLEVTSTANQDTPISQGLKPILALDVWEHAYYLNYRNVRPNYIKAFFE-VINWNTVAR 195          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = -2
Query:  207 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLES 485
            FGSGWAWLV                  + +  L V+ T NA NP+     PL+T DVWEHAYY+D +N RP Y++ F  ++V+W+ V K  +S
Sbjct:  119 FGSGWAWLV-----------------KDNNGKLEVLSTVNARNPMTEGKKPLMTCDVWEHAYYIDTRNDRPKYVNNFW-QVVNWDFVMKNFKS 193          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODM_PASHA6.597e-1339.42Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_ECO576.597e-1342.72Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_ACIAD6.597e-1345.00Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODM_STRP88.616e-1337.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP68.616e-1337.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP38.616e-1337.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_ECOLI1.125e-1241.75Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM_STRPY1.470e-1237.50Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRMU1.470e-1238.46Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODF_COXBU1.470e-1240.86Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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