CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  198 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 488
            +FGSGWAWLV                    +  L V+ T N   P++    P+L +DVWEHAYYL+++N RP+YI  F + +++W  V++  ++AKA
Sbjct:  124 RFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  198 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 488
            +FGSGWAWLV                    +  L V+ T N   P++    P+L +DVWEHAYYL+++N RP+YI  F + +++W  V++  ++AKA
Sbjct:  124 RFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  198 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 488
            +FGSGWAWLV                    +  L V+ T N   P++    P+L +DVWEHAYYL+++N RP+YI  F + +++W  V++  ++AKA
Sbjct:  124 RFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNELYQAAKA 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = -2
Query:  198 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 488
            +FGSGWAWL                 P+ +   L V  + N  +PL+   +P+L +DVWEHAYYL +QNRRP+YI  F  ++V W  V++R E A A
Sbjct:  126 RFGSGWAWLTVT--------------PAGR---LRVDSSANQDSPLMEGNTPILGLDVWEHAYYLQYQNRRPEYIEAFY-RVVDWAEVARRYEIALA 204          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_PSEPU (Superoxide dismutase [Fe] OS=Pseudomonas putida GN=sodB PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = -2
Query:  210 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 485
            FGSGW WLV K                  D SL +  T  A  PL    +PLLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:  119 FGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_PSEPK (Superoxide dismutase [Fe] OS=Pseudomonas putida (strain KT2440) GN=sodB PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 39/92 (42.39%), Postives = 50/92 (54.35%), Query Frame = -2
Query:  210 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 485
            FGSGW WLV K                  D SL +  T  A  PL    +PLLT DVWEHAYY+D++N RP Y+  F + LV+W  V+++ E
Sbjct:  119 FGSGWGWLVKKA-----------------DGSLALASTIGAGCPLTSGDTPLLTCDVWEHAYYIDYRNLRPKYVEAFWN-LVNWAFVAEQFE 192          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.274e-12
Identity = 39/89 (43.82%), Postives = 47/89 (52.81%), Query Frame = -2
Query:  219 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 485
            FGSGW WLV K                  D +L +V T NA  PL      LLT DVWEHAYY+D++N RP Y+  F   LV+WE  +K
Sbjct:  119 FGSGWTWLVKKA-----------------DGTLDIVNTSNAATPLTTADKALLTCDVWEHAYYIDYRNARPKYLENFW-ALVNWEFAAK 189          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV                   K+  L V  T N   P+     P+L +DVWEHAYY+ ++N RPDYI  F   +++W  V +   +AK
Sbjct:  123 TRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDELYAAAK 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.585e-12
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = -2
Query:  201 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 491
            T+FGSGWAWLV                   K+  L V  T N   P+     P+L +DVWEHAYY+ ++N RPDYI  F   +++W  V +   +AK
Sbjct:  123 TRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDELYAAAK 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 38/86 (44.19%), Postives = 48/86 (55.81%), Query Frame = -2
Query:  231 FGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 485
            FGS W WLV                    D SL +V T NA  PL  D  +P+LT+D+WEHAYY+D++N RPDY+  F   LV+WE
Sbjct:  118 FGSSWTWLV-----------------KLADGSLDIVNTSNAATPLTDDGVTPILTVDLWEHAYYIDYRNVRPDYLKGFW-SLVNWE 185          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODM_STRAG1.920e-1237.11Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA51.920e-1237.11Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA31.920e-1237.11Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_BORPE1.920e-1241.24Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]
SODF_PSEPU3.274e-1242.39Superoxide dismutase [Fe] OS=Pseudomonas putida GN... [more]
SODF_PSEPK3.274e-1242.39Superoxide dismutase [Fe] OS=Pseudomonas putida (s... [more]
SODF_BORPE3.274e-1243.82Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODM_STRR65.585e-1238.14Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN5.585e-1238.14Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODF_PSEHT7.294e-1244.19Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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