CN181731

Overview
NameCN181731
Unique NameCN181731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1875 contig Csv1_Contig1875:40..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181731 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.235e-27
Identity = 71/200 (35.50%), Postives = 92/200 (46.00%), Query Frame = 2
Query:   98 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 694
            F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   23 FNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CN181731 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.930e-27
Identity = 72/200 (36.00%), Postives = 91/200 (45.50%), Query Frame = 2
Query:   98 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 694
            F+I NNC  T+W A +P GGG  L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAEY +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   23 FNIKNNCGFTIWPAGIPVGGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CN181731 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.523e-26
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 2
Query:   95 KFDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 343
            KFDI N C  TVWAA +PGGG++LD+GQTWT+  A GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   21 KFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
BLAST of CN181731 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.788e-26
Identity = 71/200 (35.50%), Postives = 96/200 (48.00%), Query Frame = 2
Query:   98 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 694
            F ITNNC  TVW AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS           C+     +C +                                       CPD Y  P D    T +C + ++Y++ FCP
Sbjct:   24 FTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDD--PKTHSCNTNSNYQITFCP 169          
BLAST of CN181731 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 71/200 (35.50%), Postives = 91/200 (45.50%), Query Frame = 2
Query:   98 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 694
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CN181731 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 74/200 (37.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   98 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 694
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +       LK                 C +SG              CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGV------ALK-----------------CRDSG--------------CPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CN181731 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 70/200 (35.00%), Postives = 91/200 (45.50%), Query Frame = 2
Query:   98 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 694
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
The following BLAST results are available for this feature:
BLAST of CN181731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1A_HORVU5.235e-2735.50Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_WHEAT8.930e-2736.00Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
PRR3_JUNVI1.523e-2663.86Pathogenesis-related protein (Fragment) OS=Juniper... [more]
RST4_AVESA5.788e-2635.50Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
RST1_AVESA2.432e-2435.50Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA5.418e-2437.00Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA5.418e-2435.00Thaumatin-like pathogenesis-related protein 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181731 ID=CN181731; Name=CN181731; organism=Citrus sinensis; type=EST; length=727bp
GAGGATTATCCGCTCCAAAATGAGATTCATTAAAGCTCTTCCCATTTCTT
CTGCTCTTCTTATTATCATTTCCATCACCCTGACTCATGCTGCCAAATTC
GATATCACAAACAATTGCCCCGACACCGTCTGGGCCGCCGCTGTGCCCGG
AGGCGGCAGGCAACTCGACAAGGGTCAAACATGGACCATCACCGCCGCGC
CAGGCACAAAAGCAGCCCGCATTTGGGCTCGAACCAAATGCCAGTTTGAT
GCTTCCGGCAAAGGCAAATGCGAGACCGGTGACTGTAACGGACTCCTCGA
GTGCCAAGGCTACGGTGCAGCACCTAACACCTTGGCCGAGTACGCGTTGA
AGCAATTCAATGACATGGATTTCATTGACATGTCCAACATTGACGGATTC
AATGTTCCCATGGAATTTAGCTCTGTCTCTCCCTCATGCAACCGCGTGAT
CAAGTGCACTGCTAACATTCTTGGCGAGTGCCCTAATGAATTGAAGGTTC
CTGGAGGATGTAACGGGCCGTGCCCCGTGTTCAAGACCGACGAGTACTGT
TGCAATTCAGGCAACTGCGGACCTACAGGTTTCTCCAAGTTTTTCAAGGA
TAGGTGCCCGGATGTTTACAGTTACCCTAAGGATGACGCTACCAGCACAT
TTACTTGCCCGAGTGGGACCGACTACAAGGTTGTATTCTGCCCCCTGAAG
CATTTTTTTCAGGGGTAGAAATGGAAA
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