CN181730

Overview
NameCN181730
Unique NameCN181730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1875 contig Csv1_Contig1875:183..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181730 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.303e-17
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  311 GQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 559
            GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS
Sbjct:   49 GQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CN181730 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.303e-17
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  311 GQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 559
            GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS
Sbjct:   49 GQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CN181730 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 6.676e-16
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = -1
Query:  389 RGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 562
            +GQTWT+  A GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   46 QGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          

HSP 2 Score: 21.9422 bits (45), Expect = 6.676e-16
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = -3
Query:  558 PGGGRQLDKG 587
            PGGG++LD+G
Sbjct:   38 PGGGKRLDQG 47          
BLAST of CN181730 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.489e-14
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = -1
Query:  230 RGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP 562
            +GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS    S    ++C  +    CP+    P
Sbjct:   49 QGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFSC---STGDALQCRDS---SCPDAYHQP 149          

HSP 2 Score: 20.4014 bits (41), Expect = 2.489e-14
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = -3
Query:  558 GGGRQLDKG 584
            GGG+QLD+G
Sbjct:   42 GGGQQLDQG 50          
BLAST of CN181730 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 50/119 (42.02%), Postives = 60/119 (50.42%), Query Frame = -1
Query:  215 QTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 556
            Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS    S    +KC       CP+    P       CNG
Sbjct:   51 QSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFSC---STGVALKCRD---ANCPDAYHHPNDVATHACNG 159          
BLAST of CN181730 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.614e-14
Identity = 49/119 (41.18%), Postives = 60/119 (50.42%), Query Frame = -1
Query:  215 QTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 556
            Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC       CP+    P       CNG
Sbjct:   51 QSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKCRD---ANCPDAYHHPNDVATHACNG 159          
BLAST of CN181730 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 49/119 (41.18%), Postives = 61/119 (51.26%), Query Frame = -1
Query:  215 QTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 556
            Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC  +    CP+    P       CNG
Sbjct:   51 QSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKCRDS---GCPDAYHHPNDVATHACNG 159          
The following BLAST results are available for this feature:
BLAST of CN181730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1C_HORVU3.303e-1751.81Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU3.303e-1751.81Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
PRR3_JUNVI6.676e-1662.07Pathogenesis-related protein (Fragment) OS=Juniper... [more]
RST4_AVESA2.489e-1439.64Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
RST1_AVESA3.418e-1442.02Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST2_AVESA7.614e-1441.18Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST3_AVESA9.944e-1441.18Thaumatin-like pathogenesis-related protein 3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181730 ID=CN181730; Name=CN181730; organism=Citrus sinensis; type=EST; length=589bp
TTCTATTTCCATTTCTACCCCTGAAAAAAATGCTTCAGGGGCCCAATACA
ACCTTGTAGTCGGTCCCACTCGGGCAAGTAAATGTGCTGGTAGCGTCATC
CTTAGGGTAACTGTAAACATCCGGGCACCTATCCTTGAAAAACTTGGAGA
AACCTGTAGGTCCGCAGTTGCCTGAATTGCAACAGTACTCGTCGGTCTTG
AACACGGGGCACGGCCCGTTACATCCTCCAGGAACCTTCAATTCATTAGG
GCACTCGCCAAGAATGTTAGCAGTGCACTTGATCACGCGGTTGCATGAGG
GAGAGACAGAGCTAAATTCCATGGGAACATTGAATCCGTCAATGTTGGAC
ATGTCAATGAAATCCATGTCATTGAATTGCTTCAACGCGTACTCGGCCAA
GGTGTTAGGTGCTGCACCGTAGCCTTGGCACTCGAGGAGTCCGTTACAGT
CACCGGTCTCGCATTTGCCTTTGCCGGAAGCATCAAACTGGCATTTGGTT
CGAGCCCAAATGCGGGCTGCTTTTGTGCCTGGCGCGGCGGTGATGGTCCA
TGTTTGACCCCTTGTCGAGTTGCCTGCCGCCTCCGGGCA
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