CN181728

Overview
NameCN181728
Unique NameCN181728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 5.298e-62
Identity = 115/128 (89.84%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 149          

HSP 2 Score: 67.3958 bits (163), Expect = 5.559e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  182 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 400
            M D  SEE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MTDALSEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 5.298e-62
Identity = 115/128 (89.84%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   11 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 138          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_STYLE (Calmodulin OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 6.919e-62
Identity = 117/128 (91.41%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL+LMARKMKDTD+EEEL EAF+VFD+D NG ISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDG INYEEFV++MMAK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELVEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGHINYEEFVRMMMAK 149          

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  182 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 400
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADNLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 76          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 6.919e-62
Identity = 115/128 (89.84%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADG+GTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          

HSP 2 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  182 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 400
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DGDG I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARK 76          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 236.498 bits (602), Expect = 6.919e-62
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTCK 149          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_TETPY (Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4)

HSP 1 Score: 235.728 bits (600), Expect = 1.180e-61
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL+LMARKMKDTD+EEEL EAF+VFD+D NG ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDG INYEEFV++MMAK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGHINYEEFVRMMMAK 149          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.541e-61
Identity = 114/128 (89.06%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTE ELQDMINEVDADGNGTIDFPEFL +MARKM+DTDSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINY+EFVK+M++K
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDEFVKMMLSK 149          

HSP 2 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  182 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 400
            M D  SEE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARK 76          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_ACHKL (Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 1.541e-61
Identity = 115/128 (89.84%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRS+GQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ EAF+ FDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:   22 KDGDGTITTKELGTVMRSVGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFQGFDKDGNGFISAAELRHMMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 2.629e-61
Identity = 114/128 (89.06%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADG+GTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD +GFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          

HSP 2 Score: 67.781 bits (164), Expect = 4.256e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  182 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 400
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DGDG I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARK 76          
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 2.629e-61
Identity = 114/128 (89.06%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELR+VMTNLGEKLTDE VDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
The following BLAST results are available for this feature:
BLAST of CN181728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
CALM_HALOK5.298e-6289.84Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALMB_ARBPU5.298e-6289.84Calmodulin-beta (Fragment) OS=Arbacia punctulata P... [more]
CALM_STYLE6.919e-6291.41Calmodulin OS=Stylonychia lemnae PE=3 SV=2[more]
CALM_PYUSP6.919e-6289.84Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]
CALMB_HALRO6.919e-6289.84Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]
CALM_TETPY1.180e-6190.63Calmodulin OS=Tetrahymena pyriformis PE=1 SV=4[more]
CALM_PAXIN1.541e-6189.06Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CALM_ACHKL1.541e-6189.84Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3[more]
CALM_PATSP2.629e-6189.06Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_OREMO2.629e-6189.06Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181728 ID=CN181728; Name=CN181728; organism=Citrus sinensis; type=EST; length=566bp
AAAAAACTGGAAAAGTTGCTCCAGTCACAAGACAAATTGAAGCAGGAGAC
AACATGCTTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAA
AAAAGGAAACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTT
CCAGGAAGTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTG
ACAAATTCCTCATAATTTATCTGGCCATCACCATCGACATCAGCTTCCCT
TATCATCTCATCGACTTCCTCATCAGTAAGCTTCTCCCCAAGGTTTGTCA
TCACATGACGCAGTTCAGCAGCTGAAATGAAACCATTCTGATCCTTGTCG
AAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCAT
CTTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTAC
CATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGG
TTCTGACCCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTAATGCA
ACCGTCGCCGTCCTTG
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