CN181718

Overview
NameCN181718
Unique NameCN181718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1071 contig Csv1_Contig1071:86..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.821e-41
Identity = 95/209 (45.45%), Postives = 133/209 (63.64%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEG---DGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            K L  +SMN  V++V+YAVRG +  RA EL++E ++        +I  N+G+  A+GQ P+TFPRQV+ALC  P LL+ P+    FP DA  RA+  L    G  LGAYS S G+  +R++VA +IERRDG  P+DP  IFL+ GAS  ++  L  ++ GEG    GVL+P+PQYPLYSA ++      V YYL+E   W LD+ +L++
Sbjct:   19 KVLTLDSMNPYVRRVEYAVRGPIVQRALELEQELRQGVKKPFTEVIRANIGDAQAMGQIPITFPRQVLALCVHPDLLNSPD----FPDDAKRRAERILQACGGHSLGAYSISAGVQMIREDVARYIERRDGGIPADPNNIFLSTGASDAIVTVLKLLVTGEGRTRTGVLIPIPQYPLYSAALAEFNAVQVDYYLDEERAWALDVAELRR 223          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.036e-41
Identity = 95/207 (45.89%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   76 LDYESMNENVKKVQYAVRGELYLRASELQKEGKK---------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIV----FPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRD-GYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQ 654
            L  E +NENV K +YAVRG + +RA EL+ + +K         II  N+GNP  L Q+PLT+ RQV++L Q P LL+     +V    F  DAI RAK  +    G +GAYS S+G+ G+RK VAEFI +RD G  S PE IFLT GAS  V   L+   RG   GVL+P+PQYPLY+AT++L     +PYYL+E + W  +  +++
Sbjct:  111 LTLEDVNENVLKAKYAVRGAIPMRAEELKAQLEKDPQSLPFDRIINANIGNPQQLQQKPLTYYRQVLSLLQYPELLNQNEQQLVDSKLFKLDAIKRAKSLMEDIGGSVGAYSSSQGVEGIRKSVAEFITKRDEGEISYPEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYTATLALNNSQALPYYLDENSGWSTNPEEIE 317          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT2_XENTR (Alanine aminotransferase 2 OS=Xenopus tropicalis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.541e-40
Identity = 96/209 (45.93%), Postives = 134/209 (64.11%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKE---GKKIIFT-----NVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEGD---GVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            + L  ESMN  ++KV+YAVRG + +RA EL+KE   G K  FT     N+G+ HA+GQ+P+TF RQV A+C  P L++D      FP D   +A   L    G  +GAYS S+GI  +R++VA++IERRDG   SDP  I+L+ GAS  ++  L  ++ G+G    GVL+P+PQYPLYSA ++ L    V YYL+E   W LDIN+L++
Sbjct:   47 RILTLESMNPCIQKVEYAVRGPIVIRAVELEKELQQGVKKPFTEVIKANIGDAHAMGQKPITFLRQVSAICLYPELMNDNK----FPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERRDGGIQSDPNNIYLSTGASDSIVTMLKLLVSGQGKSRTGVLIPIPQYPLYSAALAELNAVQVNYYLDEENCWALDINELRR 251          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.305e-39
Identity = 86/205 (41.95%), Postives = 130/205 (63.41%), Query Frame = 1
Query:   85 ESMNENVKKVQYAVRGELYLRASELQKEGKK---------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGI----VFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            + +N  V K +YAVRG +  RA EL++E KK         II  N+GNP  L Q+PLTF RQV+A+ + P +L   +  +    +F  DA+ RA+  L+   G +GAYS S+G+PG+R+ VA+FI RRDG  P+ PE I+LT GAS      L+ + +    G+L+P+PQYPLY+A+ SL    ++PYYL+E +NW  + +++++
Sbjct:   29 KDLNTGVTKAEYAVRGAIPTRADELKEELKKNPEVLPFDDIINANIGNPQQLDQKPLTFTRQVLAILEYPEILRVGHNELASLNLFSRDALERAERLLNDIGGSIGAYSHSQGVPGIRQTVADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYTASASLFNAQVLPYYLDEESNWSTNSDEIEK 233          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT2_XENLA (Alanine aminotransferase 2 OS=Xenopus laevis GN=gpt2 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.704e-39
Identity = 94/209 (44.98%), Postives = 134/209 (64.11%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKE---GKKIIFT-----NVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEGD---GVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            + L  +SMN  ++KV+YAVRG + +RA EL+KE   G K  FT     N+G+ HA+GQ+P+TF RQV A+C  P L++D      FP D   +A   L    G  +GAYS S+GI  +R++VA++IERRDG   SDP  I+L+ GAS  ++  L  ++ G+G    GV++P+PQYPLYSA ++ L    V YYL+E   W LDIN+L++
Sbjct:   63 RILTLDSMNPCIQKVEYAVRGPIVIRAVELEKELQQGVKKPFTEVIKANIGDAHAMGQKPVTFLRQVSAICLYPELMNDNK----FPEDVKQKAARILQACGGHSIGAYSASQGIEVIRQDVAKYIERRDGGILSDPNNIYLSTGASDSIVTMLKLLVSGQGKSRTGVMIPIPQYPLYSAALAELDAVQVNYYLDEENCWALDINELRR 267          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: AAT_MYCTU (Probable aspartate aminotransferase OS=Mycobacterium tuberculosis GN=aspC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 60/190 (31.58%), Postives = 95/190 (50.00%), Query Frame = 1
Query:   88 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQ 654
            + +  ++ V Y +RG ++  A+ L+ EG +I+  N+GNP                   APF  + P+V +     A+  A+            YSDS+GI   R+ V    E   G+P  D + ++L +G S+ +  TL  ++   GD VL+P P YPL++A+ SL GG+ V Y  +ET  W  DI DL+
Sbjct:   29 AQSAKLQDVLYEIRGPVHQHAARLEAEGHRILKLNIGNP-------------------APFGFEAPDVIMRDIIQALPYAQ-----------GYSDSQGILSARRAVVTRYELVPGFPRFDVDDVYLGNGVSELITMTLQALL-DNGDQVLIPSPDYPLWTASTSLAGGTPVHYLCDETQGWQPDIADLE 187          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: AAT_MYCBO (Probable aspartate aminotransferase OS=Mycobacterium bovis GN=aspC PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 60/190 (31.58%), Postives = 95/190 (50.00%), Query Frame = 1
Query:   88 SMNENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPS-DPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQ 654
            + +  ++ V Y +RG ++  A+ L+ EG +I+  N+GNP                   APF  + P+V +     A+  A+            YSDS+GI   R+ V    E   G+P  D + ++L +G S+ +  TL  ++   GD VL+P P YPL++A+ SL GG+ V Y  +ET  W  DI DL+
Sbjct:   29 AQSAKLQDVLYEIRGPVHQHAARLEAEGHRILKLNIGNP-------------------APFGFEAPDVIMRDIIQALPYAQ-----------GYSDSQGILSARRAVVTRYELVPGFPRFDVDDVYLGNGVSELITMTLQALL-DNGDQVLIPSPDYPLWTASTSLAGGTPVHYLCDETQGWQPDIADLE 187          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: Y286_HAEIN (Uncharacterized aminotransferase HI0286 OS=Haemophilus influenzae GN=HI0286 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.716e-15
Identity = 51/187 (27.27%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   94 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQ 654
            ++ ++ V Y +RG ++  A  L++EG KI+  N+GNP                   APF       G   P + +      L    G    Y DS+G+   RK + ++ + +    +    +++ +G S+ +   +  ++  +GD VLVP+P YPL++A ++L GG  V Y  +E ANW   I+D++
Sbjct:    7 SDKLEHVCYDIRGPVHKEALRLEEEGNKILKLNIGNP-------------------APF-------GFEAPDEILVDVLRNLPSAQG----YCDSKGLYSARKAIVQYYQSKGILGATVNDVYIGNGVSELITMAMQALLN-DGDEVLVPMPDYPLWTAAVTLSGGKAVHYLCDEDANWFPTIDDIK 162          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: YFBQ_SHIFL (Uncharacterized aminotransferase yfbQ OS=Shigella flexneri GN=yfbQ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 51/187 (27.27%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   94 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQ 654
            +  ++ V Y +RG +   A  L++EG K++  N+GNP                   APF  D P+  +V     +  A+            Y DS+G+   RK + +  + R       E I++ +G S+ ++Q +  ++   GD +LVP P YPL++A +SL  G  V Y  +E+++W  D++D++
Sbjct:    7 SSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNP-------------------APFGFDAPDEILVDVIRNLPTAQ-----------GYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNS-GDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIR 162          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: YFBQ_ECOLI (Uncharacterized aminotransferase yfbQ OS=Escherichia coli (strain K12) GN=yfbQ PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.241e-15
Identity = 51/187 (27.27%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   94 NENVKKVQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQ 654
            +  ++ V Y +RG +   A  L++EG K++  N+GNP                   APF  D P+  +V     +  A+            Y DS+G+   RK + +  + R       E I++ +G S+ ++Q +  ++   GD +LVP P YPL++A +SL  G  V Y  +E+++W  D++D++
Sbjct:    7 SSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNP-------------------APFGFDAPDEILVDVIRNLPTAQ-----------GYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQALLNS-GDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIR 162          
The following BLAST results are available for this feature:
BLAST of CN181718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ALAT1_BOVIN1.821e-4145.45Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]
ALAM_YEAST9.036e-4145.89Probable alanine aminotransferase, mitochondrial O... [more]
ALAT2_XENTR1.541e-4045.93Alanine aminotransferase 2 OS=Xenopus tropicalis G... [more]
ALAT_YEAST1.305e-3941.95Probable alanine aminotransferase OS=Saccharomyces... [more]
ALAT2_XENLA1.704e-3944.98Alanine aminotransferase 2 OS=Xenopus laevis GN=gp... [more]
AAT_MYCTU3.127e-1731.58Probable aspartate aminotransferase OS=Mycobacteri... [more]
AAT_MYCBO3.127e-1731.58Probable aspartate aminotransferase OS=Mycobacteri... [more]
Y286_HAEIN1.716e-1527.27Uncharacterized aminotransferase HI0286 OS=Haemoph... [more]
YFBQ_SHIFL2.241e-1527.27Uncharacterized aminotransferase yfbQ OS=Shigella ... [more]
YFBQ_ECOLI2.241e-1527.27Uncharacterized aminotransferase yfbQ OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181718 ID=CN181718; Name=CN181718; organism=Citrus sinensis; type=EST; length=659bp
GAGGGCCAACTGGGTCTCGTTTGACAATCTTTCTACTATCAAATGGGCGT
TTAGTACATCATGGCACCAAAGGCATTGGACTATGAGTCTATGAATGAAA
ACGTGAAGAAGGTTCAATATGCTGTTAGAGGAGAGTTGTATCTTCGAGCT
TCTGAGCTTCAGAAGGAAGGGAAGAAGATTATTTTTACAAATGTTGGCAA
CCCTCATGCTCTGGGACAGAGGCCATTGACCTTCCCTCGGCAGGTGGTTG
CTCTTTGCCAGGCTCCATTTTTGCTAGATGATCCTAATGTAGGAATTGTC
TTCCCTGCTGATGCAATTGCAAGAGCTAAACATTATCTTTCCCTGACTTC
AGGGGGTCTAGGTGCTTACAGTGACTCCAGAGGTATTCCAGGTGTAAGGA
AGGAAGTAGCAGAGTTCATTGAAAGGCGTGATGGTTATCCAAGTGACCCA
GAACTCATATTTCTCACTGATGGTGCCAGCAAAGGAGTTATGCAGACTTT
AAATTGTGTCATCCGTGGTGAAGGGGATGGGGTTTTGGTTCCAGTTCCAC
AGTACCCACTGTACTCAGCTACCATATCTCTTTTAGGTGGTTCTCTTGTT
CCATACTACTTGGAAGAGACAGCAAATTGGGGTCTTGATATTAATGACCT
TCAGCAGTC
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