CN181711

Overview
NameCN181711
Unique NameCN181711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181711_ssr360 microsatellite CN181711_ssr360:360..371. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10452 contig Csv1_Contig10452:19..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_PONAB (Nascent polypeptide-associated complex subunit alpha OS=Pongo abelii GN=NACA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETDVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_HUMAN (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 88/138 (63.77%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ V GV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK +N DIV+AIMELT
Sbjct:   79 AMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_BOVIN (Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACAM_MOUSE (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct: 2051 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 2186          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_DROME (Nascent polypeptide-associated complex subunit alpha OS=Drosophila melanogaster GN=Nacalpha PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.206e-24
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = -2
Query:  199 MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 609
            MLKLG+K + GV+RVTI+++KNILF I+ PDV+K+P+S+TY++FGEAKIED           +F+ P+     A                         + +DI+LV+TQA  +R+KA+KALK +N DIV+AIMELT
Sbjct:   80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPEAAGA-ADSVGATTSVAPIAEEDEEDVDDTGVDEKDIELVITQANTTRAKAIKALKNNNNDIVNAIMELT 215          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.575e-24
Identity = 66/142 (46.48%), Postives = 88/142 (61.97%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVM----AKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED           +F++P   S +    A                         E RDI+LVM QA VSR+KAV+AL+ ++ DIV+AIMELT
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPESAPRPRVRLECKEEEEEEEEEVDEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELT 1561          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_CHILA (Nascent polypeptide-associated complex subunit alpha OS=Chinchilla lanigera PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24
Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+ VM+QA VSR+KAV+ALK ++ +IV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIEWVMSQANVSRAKAVRALKNNSNNIVNAIMELT 214          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA2_HUMAN (Nascent polypeptide-associated complex subunit alpha-2 OS=Homo sapiens GN=NACA2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.316e-22
Identity = 62/138 (44.93%), Postives = 83/138 (60.14%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG+  VTGV+RVTI ++KNILF I+K DV+KSP S+ Y++FGEAKI+D           +FR+   G  +                          E +D+ LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   79 AMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAYIVFGEAKIQDLSQQAQLAAAEKFRV--QGEAVGNIQENTQTPTVQEESEEEEVDETGVEVKDVKLVMSQANVSRAKAVRALKNNSNDIVNAIMELT 214          
The following BLAST results are available for this feature:
BLAST of CN181711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACA_PONAB3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]
NACA_MOUSE3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]
NACA_HUMAN3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]
NACA_DANRE3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOVIN3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]
NACAM_MOUSE3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]
NACA_DROME1.206e-2444.53Nascent polypeptide-associated complex subunit alp... [more]
NACAD_HUMAN1.575e-2446.48NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_CHILA5.985e-2445.65Nascent polypeptide-associated complex subunit alp... [more]
NACA2_HUMAN7.316e-2244.93Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181711 ID=CN181711; Name=CN181711; organism=Citrus sinensis; type=EST; length=772bp
GGCCCTTGGAGGAAGATACTACTAACCATTAAAACAACTAGCGAGGAGGA
TTCTCATCCCCACTGCAAAAGAAATTGTATCTGCAACAGAAATTGCATTA
AGTGCACAAAAATAGAGTAGTAATTCAGTCATCTCACCGACTACAATAAC
TAAATTCATCGACAGAAAAATACTGCATGGAAGCAAATCTACTCAAGTAG
TAAGCTCCATGATAGCACTAACAATGTCTCCATTATGTGTCTTCAGAGCT
TTGACAGCCTTGCTTCTTGAGACACCGGCCTGTGTCATGACCAAATCAAT
GTCCCGAGGCTCAACTGCCGTCTCATCAACTTCCTCCTCTTCCTCATCTT
GTTGTGCACCAGCAGCAGCAGAAGAGGCATCTGGTTTCGCCATCACCGAT
CCCATGTCAGGCATCCTGAACTGCTGGGCAGCCTGTGTCTGCAGCTGGGA
GCTCAAATCCTCTATTTTGGCTTCCCCAAATATGACGTACGTTTCAGAAT
TTGGGCTCTTGAAAACATCAGGCTTTGAGATGAAAAATAGTATATTTTTG
GTTCTCTTGATGGTTACCCTGCTAACTCCTGTTACAGGTTTCATGCCCAA
CTTCAGCATTGCCTTGCGGCTCTTTTTCTCACTTCTGCTCTGCTTTGAAC
TCCCTCCTTGAGCTCCATCGTCTTTGTTGTCATCGTCGTCCTCGTCATCA
TCGTCATTGTCGTGGTCATCATCTTCTTCCTCATCGTCCTTAACATCTTC
AACTACAGGCTCATCCTCATCC
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