CN181711

Overview
NameCN181711
Unique NameCN181711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181711_ssr360 microsatellite CN181711_ssr360:360..371. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10452 contig Csv1_Contig10452:19..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_ASPOR (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus oryzae GN=egd2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 59/152 (38.82%), Postives = 85/152 (55.92%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMP--------------DMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED           Q                  D+G+ + + +                      E +DI+LVM QA VSR KAVKAL+ ++ DIV++IM L+
Sbjct:   54 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQASAAQQLAAAEAAAGEHAGHDHEHDLGTKVPEAE----TKKEEEEDDGEPVDESGLEAKDIELVMAQANVSRKKAVKALRENDNDIVNSIMALS 201          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_GIBZE (Nascent polypeptide-associated complex subunit alpha OS=Gibberella zeae GN=EGD2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 58/151 (38.41%), Postives = 79/151 (52.32%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRM-------------PDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            A+ KL +  + G++RVT++R KNILF I+ P+V+KSPNS TY++FGEAKIED           Q                P       +                        E +DI+LVMTQA VSR+KAVKALK ++ DIV++IM L+
Sbjct:   58 ALEKLHLTRIPGITRVTLRRPKNILFVINTPEVYKSPNSNTYIVFGEAKIEDVNAAAQQAAAAQLASQNAEDHSGHNHGEPSKAVEADEKKEDKEDDEDEEEEEEEEVDASGLEDKDIELVMTQANVSRNKAVKALKENDNDIVNSIMALS 208          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_BABDI (Nascent polypeptide-associated complex subunit alpha OS=Babesia divergens PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 57/152 (37.50%), Postives = 77/152 (50.66%), Query Frame = -2
Query:  196 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVM----------------AKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 603
            KLGMKPV GV++V IK++K I F ++KPDV+K PNS+TYVIFGEAK+ED             R+  + S +                A                            DIDLV++Q G +R +AV+AL  + GDIV  IM+L+T
Sbjct:   48 KLGMKPVDGVTKVCIKKSKQIYFVVNKPDVYKLPNSDTYVIFGEAKVEDMSQNSALEAAQ--RLSQLSSALQAVGADRGTDSSAAAHASGHDHAHDHDHSHGDCASKADESSVNQSDIDLVVSQVGCTREQAVEALIKNKGDIVETIMQLST 197          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_BOTFB (Nascent polypeptide-associated complex subunit alpha OS=Botryotinia fuckeliana (strain B05.10) GN=egd2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.426e-17
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPD----MGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDID----------LVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            ++ KLG+  V G++RVT++R KNILF I++P+V+KSP S TY++FGEAKIED           Q    +     G   +  D                      +  ++D          LVMTQA VSR+KAVKALK ++ DIV++IM L+
Sbjct:   60 SIAKLGLTRVPGITRVTLRRPKNILFVINQPEVYKSPTSNTYIVFGEAKIEDLNSQAQASAAAQLAAQESHDHAGHDHSGHDHSHDHGKGKAVDTEEKKEEEEDDTEEVDATGLEDKDIELVMTQASVSRNKAVKALKENDNDIVNSIMALS 211          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_NEOFI (Nascent polypeptide-associated complex subunit alpha OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGS-VMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDID----------LVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED           Q    +  +   A  D                      +  ++D          LVM QA VSR KAVKAL+ ++ DIV++IM L+
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQASAAQQLAAAEAAAGEHAGHDHDHDHGKGKAPETEAKKEEEEDDGEEVDETGLEAKDIELVMAQANVSRKKAVKALRENDNDIVNSIMALS 203          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_ASPFU (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus fumigatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGS-VMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDID----------LVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED           Q    +  +   A  D                      +  ++D          LVM QA VSR KAVKAL+ ++ DIV++IM L+
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQASAAQQLAAAEAAAGEHAGHDHDHDHGKGKAPETEAKKEEEEDDGEEVDETGLEAKDIELVMAQANVSRKKAVKALRENDNDIVNSIMALS 203          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_ASPCL (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus clavatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 57/149 (38.26%), Postives = 80/149 (53.69%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGS-VMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDID----------LVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP S T++IFGEAKIED           Q    +  +   A  D                      +  ++D          LVM QA VSR KAVKAL+ ++ DIV++IM L+
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPTSNTWIIFGEAKIEDLNSQAQASAAQQLAAAEAAAGEHAGHDHDHDHGKGKAPETEAKKEEEEDDGEEVDETGLEAKDIELVMAQANVSRKKAVKALRENDNDIVNSIMALS 203          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_ASPNC (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDID----------LVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED           Q       +  A  D                      +  ++D          LVM QA VSR KAVKAL+ ++ DIV++IM L+
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNATAQATAAQQL-AEAAANEHAGHDHEHDHGKGKAPEAEAKKEEEEDDGEEVDESGLEAKDIELVMAQANVSRKKAVKALRENDNDIVNSIMALS 201          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_AJECN (Nascent polypeptide-associated complex subunit alpha OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDM--GSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDI---------DLVMTQA--GVSRSKAVKALKTHNGDIVSAIMELT 612
            A+ KLG+K V G++RVT++R K ILF I++PDV++SP+S T++IFGEAKIED           Q    +    +  A  D                      +  ++         D+ +  A   VSR+KA+KALK ++ DIV++IM L+
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKGILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQASAAQQLAAAEAAGSNEHAGHDHASHDHGKGKAVESADKKDEEEDDEEVFDASGLEAKDIELVMAQASVSRNKAIKALKENDNDIVNSIMALS 207          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_SCLS1 (Nascent polypeptide-associated complex subunit alpha OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = -2
Query:  457 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 612
            ++ KLG+  V G++RVT++R KNILF I+ P+V+KSP S TY++FGEAKIED
Sbjct:   61 SIAKLGLTRVPGITRVTLRRPKNILFVINNPEVYKSPTSNTYIVFGEAKIED 112          
The following BLAST results are available for this feature:
BLAST of CN181711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACA_ASPOR4.908e-1838.82Nascent polypeptide-associated complex subunit alp... [more]
NACA_GIBZE8.371e-1838.41Nascent polypeptide-associated complex subunit alp... [more]
NACA_BABDI8.371e-1837.50Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOTFB5.426e-1737.50Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEOFI1.209e-1638.26Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPFU1.209e-1638.26Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPCL1.579e-1638.26Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPNC2.693e-1638.51Nascent polypeptide-associated complex subunit alp... [more]
NACA_AJECN4.753e-1334.44Nascent polypeptide-associated complex subunit alp... [more]
NACA_SCLS15.255e-1259.62Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181711 ID=CN181711; Name=CN181711; organism=Citrus sinensis; type=EST; length=772bp
GGCCCTTGGAGGAAGATACTACTAACCATTAAAACAACTAGCGAGGAGGA
TTCTCATCCCCACTGCAAAAGAAATTGTATCTGCAACAGAAATTGCATTA
AGTGCACAAAAATAGAGTAGTAATTCAGTCATCTCACCGACTACAATAAC
TAAATTCATCGACAGAAAAATACTGCATGGAAGCAAATCTACTCAAGTAG
TAAGCTCCATGATAGCACTAACAATGTCTCCATTATGTGTCTTCAGAGCT
TTGACAGCCTTGCTTCTTGAGACACCGGCCTGTGTCATGACCAAATCAAT
GTCCCGAGGCTCAACTGCCGTCTCATCAACTTCCTCCTCTTCCTCATCTT
GTTGTGCACCAGCAGCAGCAGAAGAGGCATCTGGTTTCGCCATCACCGAT
CCCATGTCAGGCATCCTGAACTGCTGGGCAGCCTGTGTCTGCAGCTGGGA
GCTCAAATCCTCTATTTTGGCTTCCCCAAATATGACGTACGTTTCAGAAT
TTGGGCTCTTGAAAACATCAGGCTTTGAGATGAAAAATAGTATATTTTTG
GTTCTCTTGATGGTTACCCTGCTAACTCCTGTTACAGGTTTCATGCCCAA
CTTCAGCATTGCCTTGCGGCTCTTTTTCTCACTTCTGCTCTGCTTTGAAC
TCCCTCCTTGAGCTCCATCGTCTTTGTTGTCATCGTCGTCCTCGTCATCA
TCGTCATTGTCGTGGTCATCATCTTCTTCCTCATCGTCCTTAACATCTTC
AACTACAGGCTCATCCTCATCC
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