CN181709
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29 Identity = 87/208 (41.83%), Postives = 114/208 (54.81%), Query Frame = -1 Query: 182 GEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 730 G PGD+G+D GLS DPE F + + L EVI+ R+AMLGA G + PE+L + G+ E WF+ G I G +Y + ++ ++ LMG E R LG DP YPGG F+PLG D ++ ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN Sbjct: 68 GRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.653e-28 Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = -1 Query: 182 GEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 730 G PGDYG+D GLS DPE F + R L EVI+ R+AMLGA+G + PE L + G+ E WF+ G I G +Y + ++ ++ LMG E R G +G+ +P YPGG F +PLG D ++ ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN Sbjct: 70 GSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.682e-28 Identity = 76/186 (40.86%), Postives = 99/186 (53.23%), Query Frame = -1 Query: 194 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 730 G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA ++ G V I TD YPGG FDPLG + P EL+ KEIKNGRLAM ++ G + Q I TG GP++NL HLADP Sbjct: 80 GSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.731e-23 Identity = 74/187 (39.57%), Postives = 97/187 (51.87%), Query Frame = -1 Query: 185 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 733 TG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+ W+ AG Q F+ ++ L H I W + G+V ++ P GEV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HL+DP +N Sbjct: 68 TGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 244
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.946e-23 Identity = 72/187 (38.50%), Postives = 97/187 (51.87%), Query Frame = -1 Query: 185 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQ-IFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 733 TG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+ W+ AG + F+ ++ L H I W + G+V ++ P GEV YPGG F+PL A EA K KEI NGRLAM + GF +Q VTGKGP +NL H++DP +N Sbjct: 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHN 243
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.312e-22 Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = -1 Query: 188 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 658 RE E+IH RWAML LG + E L GV W AG +G YLG P +++ I +V+++G +E R A + LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + GF VQA TGKGPL N A HL+DP++ Sbjct: 137 RECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLH 280
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22 Identity = 77/178 (43.26%), Postives = 95/178 (53.37%), Query Frame = -1 Query: 209 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 733 TGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF QI+ + +D+ + A+ A QVV +E +R GG L E D YPG FDPL L + K EIKNGRLAM MFG VQ+ VTGK P+ NL D Sbjct: 385 TGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINNLID 530 HSP 2 Score: 103.219 bits (256), Expect = 1.498e-21 Identity = 68/187 (36.36%), Postives = 94/187 (50.27%), Query Frame = -1 Query: 182 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 733 TGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + L + + + E +R GG GE+ D YPG FDPL L D + E+KNGRLA+ ++ G Q + TG+ PL NL+ HLA+P+ N Sbjct: 201 TGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGAN 354 HSP 3 Score: 99.3673 bits (246), Expect = 2.164e-20 Identity = 70/186 (37.63%), Postives = 94/186 (50.54%), Query Frame = -1 Query: 182 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 730 GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L G+ +W++A I +V + A G + +A G + E +DP +YPG FDPL L D K EIKNGRLA+ ++ GF VQ V G PL NLA+HL P+ N Sbjct: 17 GEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRN 166
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22 Identity = 70/158 (44.30%), Postives = 89/158 (56.33%), Query Frame = -1 Query: 188 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 658 RE E+IH RWAML LG + E L GV W AG +G YLG P +++ I +V+++G +E R A + LYPGG F DPLGLA DP A+L++ EIK+ RLAM GF VQA TGKGPL N A HL+DP++ Sbjct: 134 RECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLH 277
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19 Identity = 65/152 (42.76%), Postives = 82/152 (53.95%), Query Frame = -1 Query: 212 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 658 RE E+IH RWAMLG LG + E L G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG FDPLGLA DPE LK+ EIK+ RLAM + F +QA TGKGP+ LA Sbjct: 138 RECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLA 272
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17 Identity = 71/165 (43.03%), Postives = 87/165 (52.73%), Query Frame = -1 Query: 185 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 667 A+ RE E+IH RWAML LG + E A GV W +AG G Y G L SI + +V+L+G E YR T+P YPGG FDPL LA +D E LK EIK+ RLAM S FG+ VQA+ TG+G L +LA AD +NN Sbjct: 131 ARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA-KFADGLNN 276 The following BLAST results are available for this feature:
BLAST of CN181709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181709 ID=CN181709; Name=CN181709; organism=Citrus sinensis; type=EST; length=733bpback to top |