CN181709

Overview
NameCN181709
Unique NameCN181709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 68/199 (34.17%), Postives = 82/199 (41.21%), Query Frame = -1
Query:  224 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 730
            G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   73 GSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 66/199 (33.17%), Postives = 83/199 (41.71%), Query Frame = -1
Query:  224 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 730
            G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   73 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 67/173 (38.73%), Postives = 81/173 (46.82%), Query Frame = -1
Query:  173 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG----EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 679
            P  + + R  EV + R AML  +GCV+PELL  NGV F   VW K     F                    A+ + QVV    +E +R  GG  G    E  D  YPG  FDP  L  +       K  EIKNGRLAM  MFG  VQ  VT +GP+ NL +HL  P+  N  A
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRF--------------------ALISLQVV--APLEYWRGNGG-FGWDGEEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPLAANIGA 140          
BLAST of CN181709 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 66/199 (33.17%), Postives = 84/199 (42.21%), Query Frame = -1
Query:  224 GEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 730
            G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   78 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
The following BLAST results are available for this feature:
BLAST of CN181709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB4A_SOLLC2.317e-1434.17Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC1.962e-1333.17Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
LH15_EUGGR2.562e-1338.73Light-harvesting complex I LH35 proteins (Fragment... [more]
CB4_SPIOL2.562e-1333.17Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181709 ID=CN181709; Name=CN181709; organism=Citrus sinensis; type=EST; length=733bp
CTTTTTTTGAATACAATCCCCTCAAACTAGTAGTAGCAGTACATTACATA
ATTCACATGTTTTGCAAGTTGAAATAGAGTCACATCAATAACCAATCACT
CTCAATTCCAATTTCCACGCTACTAATGTTATCAACCGAAGCTCACTTTC
CGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACAGGGTCG
GCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAATGGC
CTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGA
TTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAAACCC
AATGGATCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTTCACCGAG
CGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAGACCACCT
GGCAAGCCCAGATGGCCAAGATGCTCTGGGCGTGGATCAAGCTTGGGTTT
CCCAAGTAGTCTAGCCCGCCCTCGCTGAAGATCTGGGCTCCCGCCTTGAA
CCACACGGCCTCACCGAACTTGACTCCGTTGCGGGCCAAGAGCTCCGGGA
AGACGCATCCAAGAGCTCCCAACATGGCCCATCTGCAGTGGATGACTTCG
AGTTCACGGTTCTTGGCAAAGGTTTCTGGGTCAGCTGAAAGCCCGGCTGT
GTCCCAACCGTAGTCGCCAGGGAACTCACCGGT
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