CN181707

Overview
NameCN181707
Unique NameCN181707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 2 
Query:  587 ASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            +SKRI KEL D ++DPPTSCSAGP  +D++HWQA+IMGP+
Sbjct:    3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPA 42
[Close]
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGP 703
            MA KRI KEL D  +DPP+SCSAGP  ED+FHWQATIMGP
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGP 40
[Close]
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGP 703
            MA KRI KEL D Q+DPP  CSAGP  +D+FHWQATIMGP
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGP 40
[Close]
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGP 703
            MA KRI KEL D Q+DPP  CSAGP  +D+FHWQATIMGP
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGP 40
[Close]
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGP 703
            MA KRI KEL D Q+DPP  CSAGP  +D+FHWQATIMGP
Sbjct:    1 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGP 40
[Close]
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 2 
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MA KRI KEL D  +DPP  CSAGP  EDMFHWQATIMGP+
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPN 41
[Close]
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 2 
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MA KRI KEL D  +DPP  CSAGP  EDMFHWQATIMGP+
Sbjct:    1 MALKRIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPN 41
The following BLAST results are available for this feature:
BLAST of CN181707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UBC4_YEAST8.587e-1167.50Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC1_COLGL8.587e-1175.00Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D1_MOUSE8.587e-1172.50Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN8.587e-1172.50Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN8.587e-1172.50Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
U2D2B_RAT8.587e-1173.17Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE8.587e-1173.17Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181707 ID=CN181707; Name=CN181707; organism=Citrus sinensis; type=EST; length=707bp
TTTCTTTGTTTTTTTCTTTTCTTCATTTTCTCGAGAAACCTTAACGAAAT
TTTCTCAGGAACCAAATAGTTTACAAATCCTTCGACAAACAGTTTACAAA
TCCTTCGATTACGAAGGAAAATGCAGTACCAGAGTTTAAAGCAGCATCAG
CAGCAGCAGCAAACACTGGTTCAACAAGCGCTTCTTCAACAAAAGTCTCT
CTACCATCCCGGCCTCTTAGCCACTCCCCAGGTCCAATTTCTCATTTGCA
TGTTGTTTCTCATCGCTTATGTGAATCCATTATGCCGTGATTTTGATTGT
GTTTTCATAATTTCAAGATTTGATTTGTTCACACTATTTAGGGTTAGCTT
GTTTGTTTTGGCTTATGTGAAACCATTACAACTCCGAACGTTCTTTCTCG
ACGATATTTGTGTTGAAGAACAAAACAAGGGGTTGTTAGAGGAGCAAGGC
GGGGGCGGCTTGACGACGTAGATCTGCTTCACCGTTTCGCTTTCTCGACG
CTATTACACTACGATCCTGTTCTCTGCCGCGCATGGTCTTAAGGTTCGTT
GTAGCTTTAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATCCGCAAAAGGATCCTCCCACATCTTGCAGCG
CTGGCCCTGCGGCTGAAGACATGTTCCACTGGCAAGCCACAATTATGGGC
CCATCTG
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