CN181701

Overview
NameCN181701
Unique NameCN181701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181701_ssr387 microsatellite CN181701_ssr387:387..407. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 60/197 (30.46%), Postives = 83/197 (42.13%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIANALD-FPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            GG  Y+V  GRRD   S +  +            + +  F +KG  + +MV L G HS+G +HC  F  R+      GR +   +   A  L+  C            + T+ +  +       DN YY+ L    G+LE D  L   P TR  V   A   D F   F  AM K+    + TG +GEIRR C A N
Sbjct:  133 GGPYYDVFLGRRDSRTSKSSLLTDLLPLPSTPISKIIQQFESKGFTVQEMVALSGAHSIGFSHCKEFVGRV------GRNNTGYNPRFAVALKKAC-------ANYPKDPTISVFNDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDPRTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 59/198 (29.80%), Postives = 88/198 (44.44%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPF-LDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIA-NALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            GG    ++TGRRDGL S    +              +  F + G++   +V L+G HSVG  HC     RLY        DP+++      +  +CP              V   +N    P  LDN+YYR ++ N+G+L +D +LA    TR  V  +A +   F  +F  A+  +     LTG +GEIR+ C   N
Sbjct:  141 GGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGIDTPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPSLNPDHVPHMLHKCPDSIPDP------KAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLAN 327          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER2_MAIZE (Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 60/197 (30.46%), Postives = 86/197 (43.65%), Query Frame = -2
Query:  119 YEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPF----LDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIANALD-FPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 694
            +++ +GR DG  S A                  + FA KG++L D+V+L G H+VG +HCS F     +  S   P       LA  LR RCP           N T   D    Q       +D  YY+ ++ +  +   D  L   P T   V+  A     +  +F  AMVKM ++EV TG QG++R+ C A N
Sbjct:  153 FDMPSGRLDGTFSNASESVKFLVPPTSNLSDLASSFAVKGMSLEDLVVLSGAHTVGRSHCSSFVSDRLDVPSDINP------ALAAFLRTRCP----------PNTTTSDDPTVMQDVVTPNAMDIQYYKNVLSHTVLFTSDAALLTSPETAKLVLDNAKIPGWWEDKFEKAMVKMASLEVKTGHQGQVRKNCRAIN 333          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 59/204 (28.92%), Postives = 87/204 (42.65%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMD-SFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQI---PFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSI----ANALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            GG  +EV  GRRD L +                   +  F  +GLN+ D++ L G H++G A C  FK R+          P M+ +F  ++ R R             +++ D + +P  I    + DN Y+  L+  RG+L  D  L            +     N   F I F  +M+KMG I VLTG++GEIR  C   N
Sbjct:  141 GGPWWEVLLGRRDSLKASFAGANQFIPAPNSSLDSLIINFKQQGLNIQDLIALSGAHTIGKARCVSFKQRIV--------QPNMEQTFYVDEFR-RHSTFRRVLGSQCKDSSRDNELSPLDIKTPAYFDNHYFINLLEGRGLLISDNVLVSEDHEGEIFQKVWEYAVNQDLFFIDFVESMLKMGNINVLTGIEGEIRENCRFVN 335          
The following BLAST results are available for this feature:
BLAST of CN181701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
PER31_ARATH2.434e-1330.46Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER42_ARATH3.179e-1329.80Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER2_MAIZE5.423e-1330.46Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1[more]
PER20_ARATH3.515e-1228.92Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181701 ID=CN181701; Name=CN181701; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTGTCCATTGTATTATCCAACTATTATTTCATACATTTAA
GCCATCAAGAAAAAACACACTAAAAATTTAAGAAGACCTATTCTAATCAG
TTATGTAAATGGTGGCCAATTTGTGGCTGTACAGAATCTCCTAATCTCTC
CTTGCATGCCAGTGAGAACTTCAATGGCTCCCATTTTCACCATTGCAGTA
CCAAACTGTATGGGAAAGTCTAAGGCATTGGCTATGCTCATCACAGTGGC
TCTTGTCAATGGGTGTAATGCCAATTCTTGATCGATTTCGAGCACTCCTC
TGTTTAGCATTAACTGTCTGTAGTAAGAGTTGTCCAGGAATGGAATTTGA
AATGGATTTTGATCAAGATCAACCGTGTTGTTTGCCGTTGTTGTTGTTGT
TGTTGTTGTGTCTAGAGGGCACCGCGCTCTCAGCTTATTCGCGAGGAATG
AATCCATTGTGGGGTCGGGTCTGCCTGTACTTCTGAAATTGTAGAGACGA
TCTTTGAAGATTGAGCAATGTGCTACTCCTACAGAGTGACCTCCCATCAG
AAGAACCATGTCGGTAAGATTGAGGCCTTTGTTAGCAAACACGGCCATAG
TCTGAGGGATCGAAGCTGAAGGACCTGGGATAGAAATGGACACATTCTGA
GCTAGAGACACTAAACCGTCTCTTCTTCCTGTTTGCACCTCATATCTTCC
TCCGCCGCCC
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