CN181697

Overview
NameCN181697
Unique NameCN181697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:867..1376. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS2_SORBI (Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.661e-42
Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = -1
Query:  161 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSVP 511
            PGLISKNIE+SL E F PLGI D+NSIFW+AHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILDEMRK   E+ +A  GEG +WGVLFGFGPG TVETVVLHSVP
Sbjct:  276 PGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGRATTGEGFEWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 84/117 (71.79%), Postives = 90/117 (76.92%), Query Frame = -1
Query:  161 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSVP 511
            PGLISKNI KSL E F PLGI DWNS+FWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILDEMR+   ++  A  GEGL+WGVLFGFGPG TVETVVLHSVP
Sbjct:  278 PGLISKNIVKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRRKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVP 394          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 84/116 (72.41%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEKSL E F PLGI DWNS+FWIAHPGGPAIL QVE          +A R+VLS YGNMS ACVLFILDEMRK   +E     GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  272 PGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRKASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 4.782e-42
Identity = 84/116 (72.41%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEKSL E F PLGI DWNS+FWIAHPGGPAIL QVE          +A R+VLS YGNMS ACVLFILDEMRK   +E     GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  272 PGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKPEKLRATREVLSNYGNMSSACVLFILDEMRKASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 6.246e-42
Identity = 85/116 (73.28%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNI+KSL E F PLGI DWNSIFWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILDEMRK   +E     GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  272 PGLISKNIQKSLVEAFQPLGISDWNSIFWIAHPGGPAILDQVELKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHSA_SOLTU (Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.246e-42
Identity = 84/116 (72.41%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEKSL E F PLGI DWNS+FWIAHPGGPAIL QVE          +A R+VLS YGNMS ACVLFILDEMRK    E     GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  272 PGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRKASTNEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.246e-42
Identity = 85/117 (72.65%), Postives = 89/117 (76.07%), Query Frame = -1
Query:  161 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSVP 511
            PGLISKNI KSL E F PLGI DWNSIFWIAHPGGPAIL QVE          K+ RQVL +YGNMS ACVLFILDEMRK   ++     GEGLDWGVLFGFGPG TVETVVLHSVP
Sbjct:  272 PGLISKNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQVETELSLKPEKLKSTRQVLRDYGNMSSACVLFILDEMRKASAKDGHRTTGEGLDWGVLFGFGPGLTVETVVLHSVP 388          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.246e-42
Identity = 85/116 (73.28%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNI+KSL E F PLGI DWNSIFWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILDEMRK   E+     GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  271 PGLISKNIQKSLTEAFKPLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAEDGLETAGEGLEWGVLFGFGPGLTVETVVLHSV 386          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS1_CASGL (Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 8.157e-42
Identity = 84/116 (72.41%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEKSL E F PLGI DWNS+FWIAHPGGPAIL QVE           A R VLSEYGNMS ACVLFILDEMR+   E+     GEGLDWGVLFGFGPG TVETVVLHS+
Sbjct:  272 PGLISKNIEKSLVEAFQPLGISDWNSLFWIAHPGGPAILDQVEEKLALKPEKLGATRHVLSEYGNMSSACVLFILDEMRRKSAEKGLKTTGEGLDWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHSA_PETHY (Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.065e-41
Identity = 85/116 (73.28%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEKSL E F PLGI DWNS+FWIAHPGGPAIL QVE          KA R VLS+YGNMS ACVLFILDEMRK   +E     GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  272 PGLISKNIEKSLEEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKPEKLKATRNVLSDYGNMSSACVLFILDEMRKASAKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
The following BLAST results are available for this feature:
BLAST of CN181697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_SORBI3.661e-4271.79Chalcone synthase 2 OS=Sorghum bicolor GN=CHS2 PE=... [more]
CHSY_ARATH4.782e-4271.79Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSB_SOLTU4.782e-4272.41Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHS1_SOLLC4.782e-4272.41Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHSJ_PETHY6.246e-4273.28Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHSA_SOLTU6.246e-4272.41Chalcone synthase 1A OS=Solanum tuberosum GN=CHS1A... [more]
CHS1_DAUCA6.246e-4272.65Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHS1_CITSI6.246e-4273.28Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS1_CASGL8.157e-4272.41Chalcone synthase OS=Casuarina glauca GN=CHS1 PE=2... [more]
CHSA_PETHY1.065e-4173.28Chalcone synthase A OS=Petunia hybrida GN=CHSA PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181697 ID=CN181697; Name=CN181697; organism=Citrus sinensis; type=EST; length=511bp
TTTTTTTTTTTTTTTTTAAAAAAAAAGGCACGATGCCTTAAACTCAATTG
ACAAAACTAAACCTTCCCACGATCAACCAATAACTCAACTGGGAAAGCAT
ACAACATAAAGTTACTGAACTACTAAACATACTGGTGGAGTTCTCACTTC
AAGCTTTGAAGGGGACACTGTGCAGCACAACGGTCTCCACGGTGAACCCC
GGCCCGAACCCGAACAGCACACCCCAATCAAGCCCTTCCCCGGGGGGGGC
TTTCGCTTCCTCAACAAAATTCTTTCTCATCTCGTCAAGGATGAACAAGA
CACAAGCCCTTGACATGTTACCGTACTCACTCAACACTTGACGTGGGGCC
TTCAGCTTCTCCCCTTTGAGGCCCAATTTAAACTCCACTTGGGCCAAAAT
TGCGGGCCCCCCGGGGTGAGCGATCCAAAATATCGAGTTCCAGTCCCTGA
TGCCAAGCGGGGCGAACCCTTCAAAAAGGCTTTTCTCTATATTCTTTGAA
ATCAAGCCGGG
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