CN181689 | Citrus Genome Database

Overview


Name	CN181689
Unique Name	CN181689
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	633

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CN181689_ssr30	microsatellite	CN181689_ssr30:30..41.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14331_MAIZE (14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 56/67 (83.58%), Postives = 61/67 (91.04%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC LAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWT DI ED  +E ++
Sbjct:  185 VFYYEILNSPDRACSLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEDPAEEIRE 251

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: BMH2_YEAST (Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 PE=1 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI NSP++ACHLAKQAFD+AI+ELDTLSEESYKDSTLIMQLLRDNLTLWT DI E G ++ Q+
Sbjct:  181 VFYYEIQNSPDKACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDISESGQEDQQQ 247

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433_OENEH (14-3-3-like protein OS=Oenothera elata subsp. hookeri PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LA +AFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWT D+ +DGGDE ++
Sbjct:  185 VFYYEILNSPDRACNLANEAFDEAIAELDTLEEESYKDSTLIMQLLRDNLTLWTSDMQDDGGDEIKE 251

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14336_SOLLC (14-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LAKQAFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWT D+ +DG DE ++
Sbjct:  183 VFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGTDEIKE 249

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14335_SOLTU (14-3-3-like protein 16R OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LAKQAFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWT D+ +DG DE ++
Sbjct:  183 VFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGTDEIKE 249

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14335_SOLLC (14-3-3 protein 5 OS=Solanum lycopersicum GN=TFT5 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LAKQAFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWT D+ +DG DE ++
Sbjct:  182 VFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGTDEIKE 248

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433_TOBAC (14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.941e-25
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = -3

Query:  434 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDG----GDEAQ 631
            VFYYEI+NSPERACHLAKQAFDEAI+ELD+LSEESYKDSTLIMQLLRDN TLWT D+ E G    GDE Q
Sbjct:  179 VFYYEILNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNFTLWTSDLEEGGEHSKGDERQ 248

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433A_VICFA (14-3-3-like protein A OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.941e-25
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC LAKQAFDEAI+ELDTL EESYKDSTLIMQLLRDNLTLWT D+ +DG DE ++
Sbjct:  185 VFYYEILNSPDRACGLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKE 251

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433A_SOYBN (14-3-3-like protein A OS=Glycine max GN=GF14A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.941e-25
Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWT DI +  GDE ++
Sbjct:  183 VFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDIAGDEIKE 249

[Close]

BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433A_HORVU (14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.941e-25
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = -3

Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LAKQAFDEAI+ELD+L EESYKDSTLIMQLLRDNLTLWT D  E+GGDE ++
Sbjct:  185 VFYYEILNSPDRACNLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDNLTLWTSDNAEEGGDEIKE 251

The following BLAST results are available for this feature:

BLAST of CN181689 vs. ExPASy Swiss-Prot

BLAST of CN181689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143


Match Name	E-value	Identity	Description
14331_MAIZE	2.897e-25	83.58	14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=...	[more]
BMH2_YEAST	3.783e-25	80.60	Protein BMH2 OS=Saccharomyces cerevisiae GN=BMH2 P...	[more]
1433_OENEH	3.783e-25	79.10	14-3-3-like protein OS=Oenothera elata subsp. hook...	[more]
14336_SOLLC	3.783e-25	80.60	14-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 P...	[more]
14335_SOLTU	3.783e-25	80.60	14-3-3-like protein 16R OS=Solanum tuberosum PE=2 ...	[more]
14335_SOLLC	3.783e-25	80.60	14-3-3 protein 5 OS=Solanum lycopersicum GN=TFT5 P...	[more]
1433_TOBAC	4.941e-25	81.43	14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1	[more]
1433A_VICFA	4.941e-25	80.60	14-3-3-like protein A OS=Vicia faba PE=2 SV=1	[more]
1433A_SOYBN	4.941e-25	82.09	14-3-3-like protein A OS=Glycine max GN=GF14A PE=2...	[more]
1433A_HORVU	4.941e-25	80.60	14-3-3-like protein A OS=Hordeum vulgare PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0001F10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181689 ID=CN181689; Name=CN181689; organism=Citrus sinensis; type=EST; length=633bp
TTTTTTTTTTTTTTTTTAAAGGAAAACAATAATTAATTAATTAAAAATGT
TGTCAAGTAAACGGCAAATAAAGTGCAAAGGGGTCTTAACACCAAGTCCA
AATTGATCAGCGGCAGCAAATATAAAAAATTCTGGGATGCAAATGATACA
AGCAGTCCAATCATGAAACTCTTGACAGGGAAGATAACACCCACATTATA
GGAACAGCACAATAACAGTACTTGAGTGTCTCTTGTAAACTAAAAAAAAC
ACCGGGAGTCATAAAGGTATTGCAGCTTCCTTGCTATCATATGCTAAAGC
TCCCAAGCTCCTGGCTGGTTCACTGAGGACAGAAAACAACAAAGATTGCA
ACTGTGCTCCAAAATAGGAAAACAAACCCACCTCTGCTTCTTCAATCTTC
ACCTTCACCATCTTTAGCAAAAATGTCCATTTTCTGGGCTTCATCACCTC
CATCCTCTGGTATGTCAAAAGTCCAAAGAGTGAGGTTGTCCCTCAATAGC
TGCATTATCAACGTGCTGTCTTTGTAAGATTCCTCACTTAATGTATCCAA
TTCTGAAATGGCTTCATCAAAGGCCTGCTTTGCAAGGTGGCATGCCCTTT
CCGGAGAGTTCATAATCTCATAGTAAAAAACTG