CN181688

Overview
NameCN181688
Unique NameCN181688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2277 contig Csv1_Contig2277:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.292e-11
Identity = 46/161 (28.57%), Postives = 75/161 (46.58%), Query Frame = 1
Query:  199 SVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNPNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFTQNVPTGP 681
            S R++ ++ + +AC +W FF+++NHG+S E  +Q+  + +E +       +E        +   S   V+ G  LDW   FFL  +P S  N ++ P L   C   + E+   L KL   L+ +L  NLGL++   +  F G   G         N P  P
Sbjct:    7 SRRSDAMAVLRDACENWGFFELLNHGISHEPNEQSETVNKEHYREHYRRFREQRFKEFAAKTLDSGENVD-GDNLDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCP 164          
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  211 ETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPH--SLRNPNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQ-EDQFQNAFGGEEIGACLRVN 654
            E  + I  AC ++ FF+VVNHGV PELM +  +    FF LP  LK   A  P  Y GYG++  +     + W +Y  L+  P   S +    +   P   RE V EY + + ++   ++++++  LG++  D        E+  +CLR+N
Sbjct:   40 EAKTRIVKACEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLPQSLKNR-AGPPEPY-GYGNK-RIGPNGDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLN 187          
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 48/156 (30.77%), Postives = 68/156 (43.59%), Query Frame = 1
Query:  145 SQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMP-HSLRNPNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQ 609
            S   +PLIDL  I+           + + +AC  W  FQ+ NHGV   L+     +    F LP++ K + A S     GYG         K  WS+ F +   P H  R    WPS      E++ EY E++ KL   LM     +LG++E   Q
Sbjct:   46 SDETLPLIDLSDIH---------VATLVGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLHDFR--KLWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQ 190          
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 49/153 (32.03%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  154 NIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNPNK-WPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQ 609
            NIPLIDL    + ++         I +ACR W  FQ+ NHGV   L++    +    F LP++ K + A S T   GYG         K  WS+ F +   P  L +  K WP    +  ++V EY E++ KL   LM +   +LG+ E+  +
Sbjct:   56 NIPLIDLDHPDATNQ---------IGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETGVSGYGVARIASFFNKQMWSEGFTITGSP--LNDFRKLWPQHHLNYCDIVEEYEEHMKKLASKLMWLALNSLGVSEEDIE 197          
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 53/223 (23.77%), Postives = 90/223 (40.36%), Query Frame = 1
Query:   70 IPERYIKPSLQRPNSVKHGDRDFDDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRN--------PNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFTQN-------VPTGPYTGP 693
            IP++++ P  ++P++        D   + +PLIDL    S D  + +E    +S A     FF + NHGV   L+ +       FF  P   KQ+         GY S       +KL W +     F P    +          K         ++  EY E +  L   +M++L ++LG++   F+  F  E+  +  R+N+          + TGP+  P
Sbjct:   37 IPQQFVWPDHEKPST--------DVQPLQVPLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLITNHGVDESLLSRAYLHMDSFFKAPACEKQKAQRKWGESSGYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFF--EDSDSIFRLNYYPQCKQPELALGTGPHCDP 249          
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 52/203 (25.62%), Postives = 90/203 (44.33%), Query Frame = 1
Query:   67 SIPERYIKPSLQRPNSVKHGDRDFDDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQE-YANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLRNPNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFTQNVP 672
            S+PE ++  S + P + K        + +++P+IDL          R+E    I  A ++  FFQVVNHGVS ++M+    M  +FF+LP   K   Y+          S    + G +  W D   L        + N+WP  P   R+++ ++      +   L+++L   +G+Q D F+    G  +   L +N   + P
Sbjct:   13 SLPESFVFASDKVPPATK--------AVVSLPIIDLSC-------GRDEVRRSILEAGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSGATYDTGGEKYWRDCLRLACPFPVDDSINEWPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNV--ILNINHYPSCP 198          
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 51/218 (23.39%), Postives = 93/218 (42.66%), Query Frame = 1
Query:   85 IKPSLQRPNSVKHGD-RDFDDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLR-------NPNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFTQNVP-------TGPYTGP 693
            ++P +  P    +GD R    +++++P++D+  +   D        + ++ AC    FFQV  HGV   L +   +   +FF LPL  K+     P T  GY S       +KL W +     F   +         +    P   P  R +  +Y E + +L   +M++L ++LG++   ++  F   +  + +R N+    P       TGP+  P
Sbjct:   38 MEPKIPEPFVWPNGDARPASAAELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFA--DSSSIMRCNYYPPCPEPERTLGTGPHCDP 252          
BLAST of CN181688 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 51/218 (23.39%), Postives = 93/218 (42.66%), Query Frame = 1
Query:   85 IKPSLQRPNSVKHGD-RDFDDSQINIPLIDLQSIYSNDESVRNETLSCISNACRDWAFFQVVNHGVSPELMKQTREMWREFFNLPLELKQEYANSPTTYEGYGSRLGVEKGAKLDWSDYFFLHFMPHSLR-------NPNKWPSLPPSCRELVSEYGENLVKLCGVLMKVLSINLGLQEDQFQNAFGGEEIGACLRVNFTQNVP-------TGPYTGP 693
            ++P +  P    +GD R    +++++P++D+  +   D        + ++ AC    FFQV  HGV   L +   +   +FF LPL  K+     P T  GY S       +KL W +     F   +         +    P   P  R +  +Y E + +L   +M++L ++LG++   ++  F   +  + +R N+    P       TGP+  P
Sbjct:   38 MEPKIPEPFVWPNGDARPASAAELDMPVVDVGVLRDGDAEGLRRAAAQVAAACATHGFFQVSEHGVDAALARAALDGASDFFRLPLAEKRRARRVPGTVSGYTSAHADRFASKLPWKETLSFGFHDRAAAPVVADYFSSTLGPDFAPMGR-VYQKYCEEMKELSLTIMELLELSLGVERGYYREFFA--DSSSIMRCNYYPPCPEPERTLGTGPHCDP 252          
The following BLAST results are available for this feature:
BLAST of CN181688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ACCO_DENCR1.292e-1128.571-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
G2OX2_ARATH2.204e-1131.13Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX2_ARATH3.760e-1130.77Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX1_ARATH3.760e-1132.03Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
GAOX3_ARATH6.413e-1123.77Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
IDS3_HORVU8.376e-1125.622'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
GAOX2_ORYSJ8.376e-1123.39Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI8.376e-1123.39Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181688 ID=CN181688; Name=CN181688; organism=Citrus sinensis; type=EST; length=696bp
GACTGCCTTCAGAGTTGGCCTGAACCAATTGTCAGAGTCCAAGCTTTATC
CGAAAGTGGCATAAAATCAATCCCGGAAAGGTACATCAAGCCATCACTCC
AAAGGCCTAATTCAGTGAAACATGGTGACCGTGATTTTGATGACTCTCAA
ATCAACATTCCACTTATTGATCTTCAGAGCATATACAGCAACGACGAGAG
TGTCCGCAATGAGACGCTGAGTTGCATCTCCAACGCGTGCCGCGACTGGG
CGTTTTTCCAAGTTGTGAACCATGGGGTGAGCCCCGAACTGATGAAGCAA
ACGAGGGAGATGTGGCGCGAGTTCTTCAATCTCCCGCTTGAGCTCAAACA
GGAGTATGCAAACTCGCCGACGACATACGAAGGCTACGGTAGCCGCTTGG
GCGTCGAGAAAGGAGCAAAGCTTGATTGGAGTGACTACTTTTTCCTTCAC
TTCATGCCTCATTCCCTCAGGAATCCCAACAAGTGGCCGTCTCTCCCACC
TTCATGCAGGGAATTAGTATCGGAATATGGTGAAAATTTGGTGAAGCTGT
GCGGAGTTCTGATGAAGGTACTATCAATAAATCTCGGACTACAAGAAGAC
CAATTTCAAAATGCTTTCGGTGGAGAGGAAATTGGTGCTTGCTTGAGGGT
TAATTTTACCCAAAATGTCCCAACCGGACCTTACACTGGGCCTCTC
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