CN181687

Overview
NameCN181687
Unique NameCN181687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.891e-24
Identity = 58/136 (42.65%), Postives = 78/136 (57.35%), Query Frame = -1
Query:  282 FKMLFGGEEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYPPMTY 689
            ++  F G +  + +R+N+YP C +P  TLG  PH DP  +T+L  D NV GLQV     W +++P  +AF+VNIGD    LSN  YKS  HR +VNS   R SLAFF  P+ D ++ P    V    P  YP  T+
Sbjct:  193 YRRFFEGND--SIMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQD-NVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTW 325          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = -1
Query:  282 LRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYPPMTY 650
            +R+N+YP C +P  TLG  PH DP  +T+L  D +V GL+V     W  ++P P A +VN+GD    LSNA Y+S  HR +VNS   R SLAFF  P+ D ++ P +E V  + P +YP  T+
Sbjct:  214 MRLNYYPACQRPLDTLGTGPHCDPTSLTILHQD-HVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVYPDFTW 335          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 57/134 (42.54%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  273 EEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRG--DNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYPPMTYDEY 668
            E + A + +N+YPKCP P   LGL  H+D G  T +L    V GLQ+ R   D W+TV  VP A +VN+GD  Q+L+N  + SV HR +VN E DR+SL +F  P + + + P++E +    PA Y  +T+ EY
Sbjct:  203 ETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVL-QSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEY 334          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.439e-24
Identity = 55/146 (37.67%), Postives = 88/146 (60.27%), Query Frame = -1
Query:  225 LRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSD-LLIEPMKEFVTRNRPALYPPMTYDEY---RLYIRTKGPCGKAQVE 650
            L++N+YP+CPQP+L +G+  H+D   ++ +L +  V GLQV  G  W+T +  P   IV++GD +++LSN  Y SV HR +VN E  R+S   F  P  D +L+ P+ E VT   PA + P T+ ++   +L+ + +    KA+ E
Sbjct:  234 LKINYYPRCPQPELAVGVEAHTDVSALSFILHN-GVPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGLVNREAVRISWVVFCEPPPDSVLLHPLPELVTEGHPARFTPRTFKQHLDRKLFKKKQQHKAKAEEE 378          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.410e-24
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  273 EEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRG--DNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYPPMTYDEY 668
            E + A + +N+YPKCP P   LGL  H+D G  T +L    V GLQ+ R   D W+TV  VP A +VN+GD  Q+L+N  + SV HR +VN + DR+SL +F  P + + + P++E +    PA Y  +T+ EY
Sbjct:  203 ETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVL-QSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEY 334          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.410e-24
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = -1
Query:  273 EEIGACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRG--DNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYPPMTYDEY 668
            E + A + +N+YPKCP P   LGL  H+D G  T +L    V GLQ+ R   D W+TV  VP A +VN+GD  Q+L+N  + SV HR +VN + DR+SL +F  P + + + P++E +    PA Y  +T+ EY
Sbjct:  203 ETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVL-QSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALA-GTPAAYRAVTWPEY 334          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.410e-24
Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = -1
Query:  249 GACLRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVN-SEKDRVSLAFFY------NPKSDLLIEPMKEFVTRNRPALYPPMTYDEYRLYIRTKG 659
            G  +  ++YP CP+PDLTLG S HSD   +T+LLPD+ + GLQVRR  +W  V  V  A I+NIGD +Q+++N  + S+EHRV+ N + + RVS+A F+      NP+   +  P++E V+   P  Y   T  +Y  Y   KG
Sbjct:  218 GLLMLSHYYPPCPEPDLTLGTSQHSDNSFLTVLLPDQ-IEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPR---MYGPIRELVSEENPPKYRETTIKDYATYFNAKG 357          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 52/125 (41.60%), Postives = 77/125 (61.60%), Query Frame = -1
Query:  270 VNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYPPMTYDEYR 644
            +N+YP  P P  TLGL PH D   MT+LLP   V GL++     WI V+PVPN+ ++N G Q++V++N   K+VEHR   N  + R+S+A F  P  D ++ P +EFV+ + P  Y  +T  E++
Sbjct:  190 INYYPPSPNPSRTLGLPPHCDRDLMTVLLPGA-VPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSEDNPPRYRTLTVGEFK 313          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 58/131 (44.27%), Postives = 81/131 (61.83%), Query Frame = -1
Query:  258 LRVNFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNPKSDLLIEPMKEFVTRNRPALYPPMTYDEYRLYIR 650
            LR+N YP CP+P    GL PH+D   +T+L  D+ V GLQ+ + + WI VKP P A I+NIGD  Q  SN +YKSVEHRV+ N + +R S A+F  P  D +IE      + +RPA Y   ++ E+R  ++
Sbjct:  195 LRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQ-VGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVIE-----CSSDRPA-YRNFSFREFRQQVQ 318          
BLAST of CN181687 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.196e-23
Identity = 54/134 (40.30%), Postives = 82/134 (61.19%), Query Frame = -1
Query:  249 NFYPKCPQPDLTLGLSPHSDPGGMTLLLPDENVAGLQVRRGDNWITVKPVPNAFIVNIGDQIQVLSNAIYKSVEHRVIVNSEKDRVSLAFFYNP---KSDLLIEPMKEFVTRNRPALYPPMTYDEYRLYIRTKG 641
            N+YP CPQP+LT+G   H+D G +T+LL D+ + GLQV   ++W+ V P P + +VNIGD +Q+LSN  Y SVEHR I N+   R+S+  F+     +S  L  P+ E ++ + P  Y   T  ++  Y+  +G
Sbjct:  219 NYYPPCPQPELTMGTIQHTDIGFVTILLQDD-MGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNRG 351          
The following BLAST results are available for this feature:
BLAST of CN181687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GAO1D_WHEAT2.891e-2442.65Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAOX1_ORYSJ3.775e-2443.90Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G3O23_WHEAT3.775e-2442.54Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
LDOX_MAIZE6.439e-2437.67Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G3O22_WHEAT8.410e-2441.79Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT8.410e-2441.79Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCH3_ARATH8.410e-2441.671-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
IDS2_HORVU1.435e-2341.60Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
G2OX8_ARATH3.196e-2344.27Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
ACCH3_SOLLC3.196e-2340.301-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181687 ID=CN181687; Name=CN181687; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTTTTTTTTTCATATGAGCAAGAAGCTCCACCACACAACATCC
CTTTGATTTATTTTGTTTCCTAAATGATACAGGCAGCTCCTCATTGTAGA
TCAAAAGCAAGAGACGAATCGAAAGTTTCCATGATCAATTGATTCATATG
GATTTAGAAGCTAATAATTTATTTAAAAAGGACAGTTTACATGTATTTAG
AACCTATGGGCTTGATGTTAAGGATTCGACTTGTGCCTTGCCACAGGGAC
CCTTTGTCCGAATGTAAAGTCTATACTCATCATAAGTCATTGGTGGATAC
AAGGCTGGTCTGTTCCTTGTAACAAATTCCTTCATTGGTTCAATGAGCAA
ATCACTCTTAGGGTTGTAGAAGAAAGCTAGTGAGACTCTGTCTTTCTCTG
AATTCACAATCACTCGATGCTCCACGCTCTTGTAAATTGCGTTGCTTAGC
ACCTGAATTTGATCTCCGATGTTAACAATAAAAGCATTCGGGACAGGCTT
AACGGTGATCCAGTTATCGCCCCTACGGACTTGGAGTCCGGCGACGTTTT
CATCGGGCAGGAGAAGGGTCATGCCACCGGGGTCTGAGTGTGGGGAGAGG
CCCAGTGTAAGGTCCGGCTGGGGACATTTTGGGTAAAAATTAACCCTCAA
GCAAGCACCAATTTCCTCTCCACCGAAAAGCATTTTGAA
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