CN188673

Overview
NameCN188673
Unique NameCN188673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.217e-46
Identity = 86/148 (58.11%), Postives = 110/148 (74.32%), Query Frame = -2
Query:  319 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 762
            ++EKAK+ GV  LLPTDVV+ADKF  DAN+K+    +I D WMGLD+GP+    F E +   KT+IWNGPMGVFE +KFA GT A+A+ LA+ + +G  T+IGGGDS AA+   GL D ++H+STGGGASLE LEGK LPG+ AL +A
Sbjct:  250 ILEKAKTSGVKFLLPTDVVLADKFDQDANTKIATIDSIEDDWMGLDIGPETANCFREEVVNAKTVIWNGPMGVFEMEKFAKGTMAVAQALADATKQGAITVIGGGDSAAAIAVAGLEDSVTHVSTGGGASLEFLEGKELPGIAALSNA 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CHLP8 (Phosphoglycerate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=pgk PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.227e-45
Identity = 87/147 (59.18%), Postives = 114/147 (77.55%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+EKAK KGV L+LP DVV+A + +ADA S+V P T I DG  GLD+GP  I+++++ +   KT++WNGPMGVFE D+FA GT A+A+ LA+ +  G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK LPG+ AL+D
Sbjct:  251 LLEKAKEKGVRLILPEDVVVAAEISADAASRVEPVTTISDGMSGLDIGPATIETYAKEILGAKTVLWNGPMGVFEIDQFAKGTFAVAQALADATDAGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_BACST (Phosphoglycerate kinase OS=Bacillus stearothermophilus GN=pgk PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.734e-45
Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = -2
Query:  322 MEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 759
            MEKAK KGV   +P DVV+AD+FA DAN+KVVP  AIP  W  LD+GP   + + + +  +K ++WNGPMGVFE D FA GT+AIA+ LAE       ++IGGGDS AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  250 MEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTRELYRDVIRESKLVVWNGPMGVFEMDAFAHGTKAIAEALAE--ALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CHLTE (Phosphoglycerate kinase OS=Chlorobium tepidum GN=pgk PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.090e-45
Identity = 86/147 (58.50%), Postives = 115/147 (78.23%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+EKAK+K V LLLP DVV+A + +ADA S+V P +AI  G +GLD+GP  I+++ + +   KT++WNGPMGVFE D+FA GT A+A+ LA+ + +G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK LPG+ AL+D
Sbjct:  251 LLEKAKAKNVRLLLPEDVVVAGEISADAPSRVEPVSAISAGMIGLDIGPATIETYRKEILDAKTVLWNGPMGVFEIDQFARGTFAVAQALADATAEGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_BACLD (Phosphoglycerate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pgk PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.090e-45
Identity = 85/146 (58.22%), Postives = 111/146 (76.03%), Query Frame = -2
Query:  322 MEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 759
            M++AK KGV+  +PTDV++AD F+ DAN+K+VP + IP  W  LD+G +  K++++ +  +K ++WNGPMGVFE D FA GT A+A+ LAE       ++IGGGDS AAVEK GLADKMSHISTGGGASLE +EGK LPGV AL+D
Sbjct:  250 MDRAKEKGVNFYMPTDVLVADDFSNDANTKIVPVSEIPSDWEALDIGEETRKTYADVIKNSKLVVWNGPMGVFEIDAFAKGTRAVAEALAE--ANDTYSVIGGGDSAAAVEKFGLADKMSHISTGGGASLEFMEGKELPGVKALND 393          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_MOOTA (Phosphoglycerate kinase OS=Moorella thermoacetica (strain ATCC 39073) GN=pgk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.039e-44
Identity = 85/147 (57.82%), Postives = 114/147 (77.55%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L++ A  KGV +LLP D+V+A +F ADA  +VV   A+PDGWM LD+GP+  ++++ AL+  +T++WNGPMGVFE + FA GTEA+A+ +A + G    TI+GGGDSVAAVEK+G+A K+ HISTGGGASLE LEGK LPGV+AL +
Sbjct:  249 LIQLAAQKGVKMLLPRDLVVAQEFKADAPHQVVAVNAVPDGWMALDIGPETARAYAGALEGARTVVWNGPMGVFEMEAFAHGTEAVARAVAAVDG---MTIVGGGDSVAAVEKMGVAGKIGHISTGGGASLEFLEGKALPGVVALTE 392          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_DEIGD (Phosphoglycerate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=pgk PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.772e-44
Identity = 86/137 (62.77%), Postives = 108/137 (78.83%), Query Frame = -2
Query:  328 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 738
            G  L+LPTD V AD+FA DA ++VVPA  IPDGWMGLD+GP+  ++++EAL   KT+ WNGPMGVFEF  FAAGT A+A+ +AEL G    T++GGGDSV+A+ + G A K+SHISTGGGASLELLEG+ LPGV A+
Sbjct:  253 GDRLMLPTDAVAADRFAPDAQTRVVPADRIPDGWMGLDIGPETARAYAEALQGAKTVFWNGPMGVFEFPAFAAGTNAVAQAVAEL-GNQAYTVVGGGDSVSAINQSGQASKVSHISTGGGASLELLEGQLLPGVEAM 388          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_GEOKA (Phosphoglycerate kinase OS=Geobacillus kaustophilus GN=pgk PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 88/146 (60.27%), Postives = 108/146 (73.97%), Query Frame = -2
Query:  322 MEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 759
            MEKAK KGV   +P DVV+AD+FA DAN+KVV   AIP  W  LD+GP   + + + +  +K ++WNGPMGVFE + FA GT+AIA+ LAE       ++IGGGDS AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  250 MEKAKEKGVRFYMPVDVVVADRFANDANTKVVAIDAIPSDWEALDIGPKTRELYRDVIRQSKLVVWNGPMGVFEMEAFAHGTKAIAEALAE--APDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 85/148 (57.43%), Postives = 105/148 (70.95%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+EKAK KGV ++LP D VIA K       KVV     IP+GWMGLD+GP+ I+ F + L   KT++WNGPMGVFE D FA GT+ +A  +A L+ KG  T++GGGDS AAV K GL DK SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  249 LLEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETIELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_THESQ (Phosphoglycerate kinase OS=Thermotoga sp. (strain RQ2) GN=pgk PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 84/148 (56.76%), Postives = 105/148 (70.95%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+EKAK KGV ++LP D VIA K       KVV     IP+GWMGLD+GP+ ++ F + L   KT++WNGPMGVFE D FA GT+ +A  +A L+ KG  T++GGGDS AAV K GL DK SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  249 LLEKAKEKGVEIVLPVDAVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETVELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
The following BLAST results are available for this feature:
BLAST of CN188673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CHLT34.217e-4658.11Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_CHLP81.227e-4559.18Phosphoglycerate kinase OS=Chlorobaculum parvum (s... [more]
PGK_BACST2.734e-4561.64Phosphoglycerate kinase OS=Bacillus stearothermoph... [more]
PGK_CHLTE6.090e-4558.50Phosphoglycerate kinase OS=Chlorobium tepidum GN=p... [more]
PGK_BACLD6.090e-4558.22Phosphoglycerate kinase OS=Bacillus licheniformis ... [more]
PGK_MOOTA1.039e-4457.82Phosphoglycerate kinase OS=Moorella thermoacetica ... [more]
PGK_DEIGD1.772e-4462.77Phosphoglycerate kinase OS=Deinococcus geothermali... [more]
PGK_GEOKA3.947e-4460.27Phosphoglycerate kinase OS=Geobacillus kaustophilu... [more]
PGKT_THEMA3.947e-4457.43Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
PGK_THESQ5.155e-4456.76Phosphoglycerate kinase OS=Thermotoga sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188673 ID=CN188673; Name=CN188673; organism=Citrus sinensis; type=EST; length=763bp
TTTTTTTTTTTTGTAGTGCCAGGATTCATGCATTATCTAACACCTTTAAA
GGGCTCATTGTGATCAGAAAGGAACAAGAACTTCTTTTCAGGAAACTTAT
AGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAATGCA
TCACCATTCCATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCATC
TACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGCTG
ACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGAAA
GTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAGTG
TTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATATGG
CTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCACC
TCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTTCT
TGGCAATTGCCTCAGTGCCAGCAGCAAATTTATCAAATTCAAACACACCC
ATAGGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTGAA
TGACTTGATGGCATCAGGTCCAACATCCAAGCCCATCCAACCATCTGGAA
TTGCCGTTGCTGGCACCACCTTGCTGTTGGCATCAGCAGCAAACTTGTCA
GCAATAACAACATCAGTAGGGAGCAGAAGAGACACCCCTTTAGATTTGGC
CTTCTCCATAAGT
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