CN188673

Overview
NameCN188673
Unique NameCN188673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_DEIDV (Phosphoglycerate kinase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=pgk PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 85/137 (62.04%), Postives = 107/137 (78.10%), Query Frame = -2
Query:  328 GVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 738
            G  L+LPTD V AD+FAADA+++VVPA  IP+GWMGLD+GPD  ++++EAL   KT+ WNGPMGVFEF  FAAGT A+A  +  L  +   T++GGGDSV+A+ K G AD++ HISTGGGASLELLEGK LPGV A+
Sbjct:  253 GDKLMLPTDAVAADRFAADADTRVVPADQIPEGWMGLDIGPDTQQAYTEALRGAKTVFWNGPMGVFEFPAFAAGTNAVAAAVGSLKNQAY-TVVGGGDSVSAINKSGKADQIDHISTGGGASLELLEGKALPGVEAM 388          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CAEEL (Probable phosphoglycerate kinase OS=Caenorhabditis elegans GN=pgk-1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.155e-44
Identity = 89/149 (59.73%), Postives = 109/149 (73.15%), Query Frame = -2
Query:  319 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 762
            L+E AK+KGV + LP D VIADKFA DA SK V A   +PDG MGLDVGP++ K F+ A+   KTI+WNGP GVFEFDKFA GT+++  ++ + +  G  TIIGGGD+  A +K    DK+SH+STGGGASLELLEGK LPGV AL  A
Sbjct:  268 LLEAAKAKGVQIHLPVDFVIADKFAEDATSKTVTAEEGVPDGHMGLDVGPESSKIFAAAIQRAKTIVWNGPAGVFEFDKFATGTKSLMDEVVKATAAGAITIIGGGDTATAAKKYNTEDKVSHVSTGGGASLELLEGKVLPGVDALSPA 416          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_THEP1 (Phosphoglycerate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.148e-43
Identity = 83/148 (56.08%), Postives = 105/148 (70.95%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+EKAK KGV ++LP D VIA K       KVV     IP+GWMGLD+GP+ ++ F + L   KT++WNGPMGVFE D FA GT+ +A  +A L+ KG  T++GGGDS AAV K GL D+ SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  249 LLEKAKEKGVEIVLPVDTVIAQKIEPGVEKKVVRIDDGIPEGWMGLDIGPETVELFKQKLSDAKTVVWNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDRFSHVSTGGGASLEFLEGKELPGIASIAD 396          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_GEOSW (Phosphoglycerate kinase OS=Geobacillus sp. (strain WCH70) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.148e-43
Identity = 86/146 (58.90%), Postives = 109/146 (74.66%), Query Frame = -2
Query:  322 MEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 759
            MEKAK KGV+  +P DVV+AD+FA DAN+KVV   AIP  W  LD+GP   + + + +  +K ++WNGPMGVFE D FA GT+A+A+ LA+       ++IGGGDS AAVEK GLA+KM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  250 MEKAKEKGVNFYMPVDVVVADRFANDANTKVVSIDAIPSDWEALDIGPKTRELYRDVIMKSKLVVWNGPMGVFEMDAFAEGTKAVAQALAD--AVDTYSVIGGGDSAAAVEKFGLAEKMDHISTGGGASLEFMEGKQLPGVVALND 393          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CLOTE (Phosphoglycerate kinase OS=Clostridium tetani GN=pgk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.500e-43
Identity = 87/147 (59.18%), Postives = 109/147 (74.15%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            ++EKAK KGV LLLP D V A+KFA DA + +     I +G+MGLD+GP   K +S+ + + KT++WNGPMGVFEF+KFA GT  +AK +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  257 MIEKAKEKGVKLLLPVDNVAAEKFAEDAEAIITEDQNIKEGYMGLDIGPKTSKLYSQEVQSAKTVVWNGPMGVFEFEKFAKGTIEVAKAMAE---SQATTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIAALND 400          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CLOD6 (Phosphoglycerate kinase OS=Clostridium difficile (strain 630) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.500e-43
Identity = 85/147 (57.82%), Postives = 112/147 (76.19%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            +MEKAK+KGV+LLLP DVV+AD FA DA   V     + + +MGLD+GP  I +F + +  +KT++WNGPMGVFEF+ FA GT ++A+ +AEL+    TT+IGGGDS AAV ++G  DKM+H+STGGGASLE LEGK LPG+ ALD+
Sbjct:  255 MMEKAKNKGVNLLLPVDVVMADHFAPDATPIVTEDANVKEDYMGLDMGPKTIANFVKTIKESKTVVWNGPMGVFEFENFANGTLSVARAMAELT--DATTVIGGGDSAAAVNQLGFGDKMTHVSTGGGASLEFLEGKELPGIAALDN 399          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CHLL2 (Phosphoglycerate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.500e-43
Identity = 83/147 (56.46%), Postives = 111/147 (75.51%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+E+A  K + LLLP D++IA + +ADA S  V   AIPDG +G+D+GP+   ++ + +   +T++WNGPMGVFE D+FA GT AIA+ +A+ +  G TTIIGGGDS AAV K GLAD+++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  251 LIEQAARKNIKLLLPQDIIIAPEISADAESMAVAVNAIPDGMIGVDIGPETRAAYRQEILGARTVLWNGPMGVFEIDRFAEGTIAIAEAMADATAAGATTIIGGGDSAAAVAKAGLADQITHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_ANOFW (Phosphoglycerate kinase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pgk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.500e-43
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = -2
Query:  322 MEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 759
            MEKAK KGV+  +P D V+AD F+ DAN KVV    IP  W GLD+GP   + + + +  +K +IWNGPMGVFE D FA GT+A+A+ LA+   K   T+IGGGDS AAVEK GLA+KM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  250 MEKAKEKGVNFYMPVDAVVADDFSNDANKKVVNIDEIPSDWEGLDIGPKTRELYRDVILKSKLVIWNGPMGVFEMDAFAEGTKAVAQALAD--AKDTYTVIGGGDSAAAVEKFGLANKMDHISTGGGASLEFMEGKQLPGVVALND 393          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_RHOSR (Phosphoglycerate kinase OS=Rhodococcus sp. (strain RHA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.558e-43
Identity = 81/134 (60.45%), Postives = 104/134 (77.61%), Query Frame = -2
Query:  325 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 723
            +P DVVIAD F+ADA SK+V    IPDGWMGLD+GP +++ F+  L + KT+ WNGPMGVFEF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  269 IPQDVVIADSFSADAESKIVSVLEIPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_RHOOB (Phosphoglycerate kinase OS=Rhodococcus opacus (strain B4) GN=pgk PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.558e-43
Identity = 81/134 (60.45%), Postives = 104/134 (77.61%), Query Frame = -2
Query:  325 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 723
            +P DVVIAD F+ADA SK+V    IPDGWMGLD+GP +++ F+  L + KT+ WNGPMGVFEF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  269 IPQDVVIADSFSADAESKIVSVLEIPDGWMGLDIGPQSVRRFAAILTSAKTVFWNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
The following BLAST results are available for this feature:
BLAST of CN188673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_DEIDV5.155e-4462.04Phosphoglycerate kinase OS=Deinococcus deserti (st... [more]
PGK_CAEEL5.155e-4459.73Probable phosphoglycerate kinase OS=Caenorhabditis... [more]
PGK_THEP11.148e-4356.08Phosphoglycerate kinase OS=Thermotoga petrophila (... [more]
PGK_GEOSW1.148e-4358.90Phosphoglycerate kinase OS=Geobacillus sp. (strain... [more]
PGK_CLOTE1.500e-4359.18Phosphoglycerate kinase OS=Clostridium tetani GN=p... [more]
PGK_CLOD61.500e-4357.82Phosphoglycerate kinase OS=Clostridium difficile (... [more]
PGK_CHLL21.500e-4356.46Phosphoglycerate kinase OS=Chlorobium limicola (st... [more]
PGK_ANOFW1.500e-4359.59Phosphoglycerate kinase OS=Anoxybacillus flavither... [more]
PGK_RHOSR2.558e-4360.45Phosphoglycerate kinase OS=Rhodococcus sp. (strain... [more]
PGK_RHOOB2.558e-4360.45Phosphoglycerate kinase OS=Rhodococcus opacus (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188673 ID=CN188673; Name=CN188673; organism=Citrus sinensis; type=EST; length=763bp
TTTTTTTTTTTTGTAGTGCCAGGATTCATGCATTATCTAACACCTTTAAA
GGGCTCATTGTGATCAGAAAGGAACAAGAACTTCTTTTCAGGAAACTTAT
AGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAATGCA
TCACCATTCCATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCATC
TACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGCTG
ACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGAAA
GTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAGTG
TTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATATGG
CTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCACC
TCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTTCT
TGGCAATTGCCTCAGTGCCAGCAGCAAATTTATCAAATTCAAACACACCC
ATAGGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTGAA
TGACTTGATGGCATCAGGTCCAACATCCAAGCCCATCCAACCATCTGGAA
TTGCCGTTGCTGGCACCACCTTGCTGTTGGCATCAGCAGCAAACTTGTCA
GCAATAACAACATCAGTAGGGAGCAGAAGAGACACCCCTTTAGATTTGGC
CTTCTCCATAAGT
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