CN188673

Overview
NameCN188673
Unique NameCN188673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_PELTS (Phosphoglycerate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pgk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.075e-41
Identity = 86/147 (58.50%), Postives = 107/147 (72.79%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+ +A+S+ V LLLP DVV+A   A     + VP   IP  WM LD+GP++I+ F+EAL   +T++WNGPMGVFE D FA GTEAIA+ LAEL+     T+IGGGD+ AA +K G+A KM+HISTGGGASLE LEGK LPGV AL D
Sbjct:  249 LIAEARSREVKLLLPVDVVVAPGPAPGQEQRTVPVDQIPAEWMALDIGPESIRLFTEALRAARTVVWNGPMGVFEMDPFARGTEAIARTLAELN---AVTVIGGGDTAAAAKKAGVAGKMTHISTGGGASLEFLEGKQLPGVRALLD 392          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CLOBH (Phosphoglycerate kinase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.075e-41
Identity = 84/147 (57.14%), Postives = 107/147 (72.79%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            +++KAK KGV+LLLP D V+ADKF  DA+  +     I +G+MGLD+GP   K +S+A+ + KT++WNGPMGVFEF  FA GT  +AK +A+       TIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  254 MIDKAKEKGVNLLLPIDNVVADKFDKDASPVITEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFANGTIEVAKAMAD---SDAVTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CLOB1 (Phosphoglycerate kinase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.075e-41
Identity = 84/147 (57.14%), Postives = 107/147 (72.79%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            +++KAK KGV+LLLP D V+ADKF  DA+  +     I +G+MGLD+GP   K +S+A+ + KT++WNGPMGVFEF  FA GT  +AK +A+       TIIGGGDS AAV  +G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  254 MIDKAKEKGVNLLLPIDNVVADKFDKDASPVITEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFANGTIEVAKAMAD---SDAVTIIGGGDSAAAVNILGFGDKMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CHLCH (Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3) GN=pgk PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.075e-41
Identity = 77/147 (52.38%), Postives = 110/147 (74.83%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            ++E+AK+KG+ LLLPTDVV+  + +ADA S V     +P+  +G+D+GP+   ++   +   +T++WNGPMGVFE D FA GT A+A+ LA+ + +G TTI+GGGDS AA+ K GLA +++HISTGGGASLE LEGK LPG+ AL++
Sbjct:  251 ILEQAKAKGIKLLLPTDVVVTAEISADAESSVASIADMPNNLIGVDIGPETAAAYRNEIIGARTVLWNGPMGVFELDNFATGTIAVAQALADATAQGATTIVGGGDSAAAIAKAGLASEITHISTGGGASLEFLEGKELPGIAALNN 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_GEOSF (Phosphoglycerate kinase OS=Geobacter sp. (strain FRC-32) GN=pgk PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.834e-41
Identity = 86/148 (58.11%), Postives = 106/148 (71.62%), Query Frame = -2
Query:  319 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 762
            +++ A  +G+  LLP D V+AD+FAADA+ K V    IP  WM LDVGP +   FS+AL    T+IWNGPMGVFE D+FA GT AIA  +A L  K  TTIIGGGD+ +AV K G+ADK+S+ISTGGGA LELLEGK LPGV  L+ +
Sbjct:  252 ILDNAAKRGIEFLLPEDCVVADRFAADADCKTVSVNDIPSEWMALDVGPASTARFSDALKEANTVIWNGPMGVFEMDRFAKGTFAIADVVAGL--KNATTIIGGGDTDSAVRKAGVADKVSYISTGGGAFLELLEGKKLPGVEVLEQS 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_KLULA (Phosphoglycerate kinase OS=Kluyveromyces lactis GN=PGK PE=3 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.395e-41
Identity = 85/148 (57.43%), Postives = 104/148 (70.27%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVP-ATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+EKAK   V ++LPTD VI DKF+ADAN+KVV     IP GW GLD GP++ K+F+  +   KTI+WNGP GVFEF  FA GTEA+   +   S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  267 LVEKAKKNNVKIVLPTDFVIGDKFSADANTKVVTDKEGIPSGWQGLDNGPESRKAFAATVAEAKTIVWNGPPGVFEFAPFAKGTEALLDAVVASSQAGNTVIIGGGDTATVAKKYGVVDKISHVSTGGGASLELLEGKELPGVTFLSN 414          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_CLOB6 (Phosphoglycerate kinase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=pgk PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.128e-41
Identity = 84/147 (57.14%), Postives = 106/147 (72.11%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            +++KAK KGV+LLLP D V+ADKF  DA+  V     I +G+MGLD+GP   K +S+A+ + KT++WNGPMGVFEF  FA GT  +AK +A+       TIIGGGDS AAV  +G  D M+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  254 MIDKAKEKGVNLLLPIDNVVADKFDKDASPVVTEDQNIGEGYMGLDIGPKTAKIYSDAIKSAKTVVWNGPMGVFEFKSFANGTIEVAKAMAD---SDAVTIIGGGDSAAAVNILGFGDNMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_YARLI (Phosphoglycerate kinase OS=Yarrowia lipolytica GN=PGK1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.085e-41
Identity = 82/148 (55.41%), Postives = 99/148 (66.89%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADAN-SKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+EKAK   V L+ P D V ADKF+ DA       A  IPDGW GLD GP +I+ F + +  +KTI+WNGP GVFEFD FA GT+A+     +    G T IIGGGD+    +K G  DK+SH+STGGGASLELLEGKTLPGV AL +
Sbjct:  268 LVEKAKKNNVKLVFPVDYVTADKFSKDAKVGHATDAEGIPDGWQGLDCGPKSIEEFQKVIGESKTILWNGPPGVFEFDNFAKGTKAVLDACVKAVDNGATVIIGGGDTATVAKKYGAEDKLSHVSTGGGASLELLEGKTLPGVAALSE 415          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_TREDE (Phosphoglycerate kinase OS=Treponema denticola GN=pgk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.085e-41
Identity = 78/146 (53.42%), Postives = 109/146 (74.66%), Query Frame = -2
Query:  325 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 762
            L++KA+ +GV ++LP D + ++ F+ +A + +V +T IPD  MG+DVGP  +  + E + ++K+I+WNGP+GVFEF+ F+ GTE  A+ +A  + KG  TI+GGGDSVAAV K  LADKMSH+STGGGASLE LEGK LPG+  LD
Sbjct:  272 LLDKAEKQGVKIILPVDHICSETFSPNAEAVLVESTDIPDNLMGMDVGPKTLALYKEIILSSKSIVWNGPVGVFEFEAFSKGTEETARLVAAATEKGALTIVGGGDSVAAVNKFNLADKMSHVSTGGGASLEFLEGKVLPGIACLD 417          
BLAST of CN188673 vs. ExPASy Swiss-Prot
Match: PGK_FERNB (Phosphoglycerate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.085e-41
Identity = 81/148 (54.73%), Postives = 104/148 (70.27%), Query Frame = -2
Query:  322 LMEKAKSKGVSLLLPTDVVIADKFAADANSKVVPAT-AIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 762
            L+E+AK KGV L++PTD V A K  A    KV      IP+GW G D+GP +I+     L   KTI+WNGP+GVFE + FA GT+A+A+ +A L+ KGVTT++GGGDS AAV + GL  K SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  249 LLEQAKEKGVELVIPTDAVCAQKMEAGVEKKVFTCEEGIPEGWAGYDIGPASIELIKSKLADAKTIVWNGPLGVFEIEDFANGTKAVAEFIASLTDKGVTTVVGGGDSAAAVSQFGLEKKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
The following BLAST results are available for this feature:
BLAST of CN188673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PELTS1.075e-4158.50Phosphoglycerate kinase OS=Pelotomaculum thermopro... [more]
PGK_CLOBH1.075e-4157.14Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CLOB11.075e-4157.14Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_CHLCH1.075e-4152.38Phosphoglycerate kinase OS=Chlorobium chlorochroma... [more]
PGK_GEOSF1.834e-4158.11Phosphoglycerate kinase OS=Geobacter sp. (strain F... [more]
PGK_KLULA2.395e-4157.43Phosphoglycerate kinase OS=Kluyveromyces lactis GN... [more]
PGK_CLOB63.128e-4157.14Phosphoglycerate kinase OS=Clostridium botulinum (... [more]
PGK_YARLI4.085e-4155.41Phosphoglycerate kinase OS=Yarrowia lipolytica GN=... [more]
PGK_TREDE4.085e-4153.42Phosphoglycerate kinase OS=Treponema denticola GN=... [more]
PGK_FERNB4.085e-4154.73Phosphoglycerate kinase OS=Fervidobacterium nodosu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006I16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188673 ID=CN188673; Name=CN188673; organism=Citrus sinensis; type=EST; length=763bp
TTTTTTTTTTTTGTAGTGCCAGGATTCATGCATTATCTAACACCTTTAAA
GGGCTCATTGTGATCAGAAAGGAACAAGAACTTCTTTTCAGGAAACTTAT
AGCCTTACCATCACAATGTTCCAAAATGGGATCAAATCCAGAAAAATGCA
TCACCATTCCATGCCTGTGAGAAAGAATTTATTTTTACTCTTACAGCATC
TACAAAACCAACTCTAATGATAAAGTTTAACTTTTATCCACTCTGGGCTG
ACAACCAGCCACACATACAACTCTGGAAATGGCACATTTAAAAAAGGAAA
GTCCAGGAACTGGGTTTAAGCATCATCAAGAGCAAGCACACCAGGGAGTG
TTTTGCCCTCAAGGAGCTCTAAGCTGGCTCCACCTCCAGTGGAGATATGG
CTCATCTTGTCAGCCAGACCAACCTTCTCTACGGCTGCAACTGAGTCACC
TCCTCCAATGATTGTGGTCACTCCCTTCCCGCTGAGCTCCGCAAGCTTCT
TGGCAATTGCCTCAGTGCCAGCAGCAAATTTATCAAATTCAAACACACCC
ATAGGTCCATTCCAGATGATGGTTTTAGTAGTATCCAAAGCTTCACTGAA
TGACTTGATGGCATCAGGTCCAACATCCAAGCCCATCCAACCATCTGGAA
TTGCCGTTGCTGGCACCACCTTGCTGTTGGCATCAGCAGCAAACTTGTCA
GCAATAACAACATCAGTAGGGAGCAGAAGAGACACCCCTTTAGATTTGGC
CTTCTCCATAAGT
back to top