CN181677

Overview
NameCN181677
Unique NameCN181677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig567 contig Csv1_Contig567:116..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181677 vs. ExPASy Swiss-Prot
Match: CYTM_SOLTU (Multicystatin OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 2
Query:   20 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 286
            +GG+  V    NN E  +LARFAV ++NKK+N++L+F            G LY ITL A++ G+KK++EAK+W K W  FK++ EF  +
Sbjct:  476 LGGIINVPFP-NNPEFQDLARFAVQDYNKKENAHLEFVENLNVKEQLVAGMLYYITLVAIDAGKKKIYEAKIWVKEWENFKKVIEFKLI 563          

HSP 2 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 2
Query:   20 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA*LV 319
            +GG+ +V    NN E  +LARFA+  +NKK+N +L+F            G +Y ITL A++ G+KK++E K+W K W  FK++ EF  V    + T  ++
Sbjct:  193 LGGITDVPFP-NNPEFQDLARFAIQVYNKKENVHLEFVENLNVKQQVVAGMMYYITLAAIDAGKKKIYETKIWVKEWEDFKKVVEFKLVGDDSAKTGGII 291          

HSP 3 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   20 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA*LVV 322
            +GG  +V    NN E  +LARFAV ++NKK+N++L++            G +Y ITL A + G+KK++EAK+W K W  FK++ EF  V    +    +++
Sbjct:  570 IGGFTDVPFP-NNPEFQDLARFAVQDYNKKENAHLEYVENLNVKEQLVAGMIYYITLVATDAGKKKIYEAKIWVKEWEDFKKVVEFKLVGDDSAKPGGIII 669          

HSP 4 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 2
Query:   20 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 286
            +GG  EV    N+ E  +L RFAV ++NK QN++L+F            G LY IT  A +GG+KK++E K+W K W  FK++ EF  V
Sbjct:  382 LGGFTEVPFP-NSPEFQDLTRFAVHQYNKDQNAHLEFVENLNVKKQVVAGMLYYITFAATDGGKKKIYETKIWVKVWENFKKVVEFKLV 469          

HSP 5 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 2
Query:   23 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAV-EGGQKKLFEAKVWEKPWMQFKELKEFNTV 286
            GG+  V    NN +   LARFA+ ++NKKQN++L+F            G +Y ITL A  + G+KK+++AK+W K W  FK++ EF  V
Sbjct:   99 GGIVNVP-NPNNTKFQELARFAIQDYNKKQNAHLEFVENLNVKEQVVAGIMYYITLAATDDAGKKKIYKAKIWVKEWEDFKKVVEFKLV 186          

HSP 6 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 35/88 (39.77%), Postives = 50/88 (56.82%), Query Frame = 2
Query:   23 GGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTV 286
            GG+  V    N+ E  +LARFAV ++N  QN++L+F            G +Y ITL A + G KK +EAK+W K W  FK++ +F  V
Sbjct:  288 GGIINVP-NPNSPEFQDLARFAVQDYNNTQNAHLEFVENLNVKEQLVSGMMYYITLAATDAGNKKEYEAKIWVKEWEDFKKVIDFKLV 374          
BLAST of CN181677 vs. ExPASy Swiss-Prot
Match: CYT3_ORYSJ (Cysteine proteinase inhibitor 3 OS=Oryza sativa subsp. japonica GN=Os05g0409300 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.113e-14
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   14 GYVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNTVAQSHSSTA 310
            G +  +R  +A A +      ARFAV E+NK Q + L+F            GTL+D+ LE V+ G+K L+ AKVW KPW+ FK + EF  V  S S +A
Sbjct:   48 GMLAAIRREQAEAEDA-----ARFAVAEYNKNQGAELEFARIVKAKRQVVTGTLHDLMLEVVDSGKKSLYSAKVWVKPWLDFKAVVEFRHVGDSQSQSA 141          
BLAST of CN181677 vs. ExPASy Swiss-Prot
Match: CYT2_ORYSJ (Cysteine proteinase inhibitor 2 OS=Oryza sativa subsp. japonica GN=Os05g0494200 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 8.576e-12
Identity = 38/93 (40.86%), Postives = 52/93 (55.91%), Query Frame = 2
Query:    5 PKNGYVGGVREVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVE-GGQKKLFEAKVWEKPWMQFKELKEF 277
            P+   VGG+ +  A   N    V LARFAV EHN K N+ L+             G ++ +T+E  E GG  KL+EAKVWE+ W  FK+L++F
Sbjct:   51 PRGVKVGGIHDAPAGRENDLTTVELARFAVAEHNSKANAMLELERVVKVRQQVVGGFMHYLTVEVKEPGGANKLYEAKVWERAWENFKQLQDF 143          
The following BLAST results are available for this feature:
BLAST of CN181677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYTM_SOLTU4.113e-1442.70Multicystatin OS=Solanum tuberosum PE=2 SV=1[more]
CYT3_ORYSJ4.113e-1440.40Cysteine proteinase inhibitor 3 OS=Oryza sativa su... [more]
CYT2_ORYSJ8.576e-1240.86Cysteine proteinase inhibitor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181677 ID=CN181677; Name=CN181677; organism=Citrus sinensis; type=EST; length=567bp
CTTACCGAAAAATGGCTACGTAGGCGGTGTTCGTGAGGTTGAAGCAACAG
CCAACAATCAGGAGATCGTTAATCTCGCACGCTTCGCTGTGGATGAGCAT
AACAAGAAGCAGAATTCAAATCTGCAATTTGTAAAAGTTGTAAGTGCGAA
GCAGCAAGTGGTTTCAGGGACTCTGTACGACATCACCTTGGAGGCTGTTG
AAGGAGGTCAGAAGAAACTTTTTGAAGCTAAGGTCTGGGAGAAGCCTTGG
ATGCAATTCAAGGAGTTGAAAGAATTCAATACTGTGGCTCAGTCTCACTC
CTCAACCGCTTAGCTTGTGGTGACTGAAGATGACATCTACGTGTAGCTTG
CAATGGATCAAACAAAGAGACAGTATCAATAAGAATGGAGCTATAACCAT
GTTCAGAATATAAAAATAAATGTAACCGGATTTATGAGTTTGGTTCTTTA
ATCTTTTGCAAGTTATGTGTCGATTATTTATGGTAGTAGCTGCAACTCAG
CGCAACTTTTATAACTGTGTGAAAAATAATTGAAATGACCTTTGGTCTGT
AATATATATACAAGCCT
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